Strain Fitness in Shewanella oneidensis MR-1 around SO2096

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,192,897	+		SO2095	0.45	+0.3
2,193,068	-		SO2095	0.54	-0.6
2,193,071	-		SO2095	0.54	-1.4
2,193,165	+		SO2095	0.60	-1.7
2,193,165	+		SO2095	0.60	-1.8
2,193,165	+		SO2095	0.60	-1.1
2,193,198	+		SO2095	0.61	-2.0
2,193,275	+		SO2095	0.65	-1.5
2,193,371	+		SO2095	0.71	+0.3
2,193,371	+		SO2095	0.71	+0.3
2,193,384	-		SO2095	0.71	+0.5
2,193,511	-		SO2095	0.78	+0.2
2,193,736	+				-0.1
2,193,744	-				+0.5
2,193,863	+				-0.5
2,193,873	+				-1.1
2,193,930	+				-0.1
2,193,962	-		SO2096	0.14	-0.3
2,193,964	+		SO2096	0.15	+0.0
2,194,009	+		SO2096	0.22	-0.4
2,194,033	+		SO2096	0.26	-0.9
2,194,034	-		SO2096	0.27	-0.3
2,194,086	+		SO2096	0.36	+0.2
2,194,086	+		SO2096	0.36	+0.4
2,194,111	+		SO2096	0.40	+0.1
2,194,187	-		SO2096	0.53	-0.1
2,194,347	+		SO2096	0.81	-1.2
2,194,347	+		SO2096	0.81	-0.1
2,194,347	+		SO2096	0.81	-0.3
2,194,355	-		SO2096	0.82	+0.2
2,194,540	+	hydC	SO2097	0.11	+2.0
2,194,657	-	hydC	SO2097	0.28	-0.8
2,194,657	-	hydC	SO2097	0.28	-0.1
2,194,679	+	hydC	SO2097	0.32	+1.2
2,194,679	+	hydC	SO2097	0.32	+0.7
2,194,741	+	hydC	SO2097	0.41	-0.5
2,194,749	-	hydC	SO2097	0.42	-0.4
2,194,749	-	hydC	SO2097	0.42	+0.7
2,195,061	-	hydC	SO2097	0.88	-1.2
2,195,068	+	hydC	SO2097	0.89	-0.8
2,195,224	+				-0.4
2,195,280	-				-1.1
2,195,323	+				-0.7