Strain Fitness in Shewanella oneidensis MR-1 around SO2089

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,184,948	-		SO2088	0.33	-0.5
2,184,950	-		SO2088	0.33	-0.1
2,185,166	+		SO2088	0.56	-0.2
2,185,359	+		SO2088	0.77	-1.3
2,185,719	+	hypA	SO2089	0.15	-0.8
2,185,769	-	hypA	SO2089	0.29	+1.0
2,185,871	-	hypA	SO2089	0.58	-1.6
2,185,900	+	hypA	SO2089	0.66	-0.9
2,186,151	+	hypE	SO2090	0.13	-0.4
2,186,267	+	hypE	SO2090	0.24	-1.1
2,186,274	-	hypE	SO2090	0.25	-0.3
2,186,454	+	hypE	SO2090	0.43	-1.0
2,186,631	-	hypE	SO2090	0.60	-0.9
2,186,788	+	hypE	SO2090	0.75	-0.7
2,186,788	+	hypE	SO2090	0.75	-0.5
2,186,863	-	hypE	SO2090	0.83	-0.4
2,186,869	+	hypE	SO2090	0.83	-1.6
2,186,920	+	hypE	SO2090	0.88	+0.0