Strain Fitness in Shewanella oneidensis MR-1 around SO1981

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,084,626	-				-0.5
2,084,859	+		SO1980	0.27	-0.4
2,084,883	-		SO1980	0.29	-1.2
2,084,908	-		SO1980	0.32	+0.5
2,084,919	+		SO1980	0.33	-0.6
2,084,943	+		SO1980	0.36	-1.2
2,085,165	+		SO1980	0.61	-1.3
2,085,173	-		SO1980	0.61	+0.2
2,085,191	+		SO1980	0.63	-0.0
2,085,199	-		SO1980	0.64	-1.0
2,085,248	+		SO1980	0.70	+0.5
2,085,313	-		SO1980	0.77	+0.2
2,085,420	+		SO1980	0.89	+0.3
2,085,428	-		SO1980	0.90	-0.6
2,085,428	-		SO1980	0.90	-0.9
2,085,428	-		SO1980	0.90	-1.5
2,085,430	+		SO1980	0.90	-0.0
2,085,456	+				+0.5
2,085,456	-				+0.6
2,085,498	+				+2.1
2,085,506	-				+0.3
2,085,506	-				+0.8
2,085,629	+				-1.8
2,085,645	+				+1.8
2,085,743	-		SO1981	0.14	+0.8
2,085,883	-		SO1981	0.24	+1.2
2,085,904	+		SO1981	0.25	-1.5
2,085,972	+		SO1981	0.30	+0.7
2,085,973	+		SO1981	0.30	+0.6
2,085,974	+		SO1981	0.30	-2.1
2,085,980	-		SO1981	0.30	+0.5
2,085,982	+		SO1981	0.31	+0.9
2,085,992	-		SO1981	0.31	+1.1
2,086,066	+		SO1981	0.36	-0.8
2,086,141	+		SO1981	0.41	+1.3
2,086,205	-		SO1981	0.46	+1.8
2,086,242	+		SO1981	0.48	+1.2
2,086,244	+		SO1981	0.48	+0.3
2,086,262	-		SO1981	0.50	+1.6
2,086,384	+		SO1981	0.58	-0.3
2,086,437	+		SO1981	0.61	+0.5
2,086,437	+		SO1981	0.61	+1.0
2,086,502	+		SO1981	0.66	+1.0
2,086,509	+		SO1981	0.66	-0.4
2,086,599	+		SO1981	0.72	-0.7
2,086,607	-		SO1981	0.73	-0.8
2,086,637	-		SO1981	0.75	-0.9
2,086,656	+		SO1981	0.76	+1.4
2,086,717	-		SO1981	0.80	+1.4
2,086,734	+		SO1981	0.82	-1.3
2,086,742	-		SO1981	0.82	+0.9
2,086,742	-		SO1981	0.82	-1.1
2,086,833	+		SO1981	0.88	+0.8
2,086,833	+		SO1981	0.88	-0.7
2,086,833	+		SO1981	0.88	-1.1
2,086,833	+		SO1981	0.88	+0.3
2,086,833	+		SO1981	0.88	+0.9
2,086,833	+		SO1981	0.88	+0.8
2,086,833	+		SO1981	0.88	+0.1
2,086,833	+		SO1981	0.88	+0.2
2,086,835	+		SO1981	0.88	+0.2
2,086,841	-		SO1981	0.89	+0.2
2,086,841	-		SO1981	0.89	-1.1
2,086,841	-		SO1981	0.89	+0.7
2,086,841	-		SO1981	0.89	-0.9
2,086,841	-		SO1981	0.89	-1.4
2,086,846	-		SO1981	0.89	+1.0
2,086,966	+				+0.6
2,087,000	+				+1.0
2,087,008	+				-0.6
2,087,008	-				-0.3
2,087,013	-				-0.2
2,087,130	-				+1.8
2,087,174	-				+1.2
2,087,271	+				+0.4
2,087,301	+				-1.6
2,087,348	+				-0.6
2,087,349	+				+1.8
2,087,349	+				-1.2
2,087,349	+				+1.3
2,087,349	+				-1.2
2,087,349	+				-1.2
2,087,357	-				-1.2
2,087,357	-				-0.4
2,087,370	+				+1.3
2,087,378	-				+0.1
2,087,521	-				-2.2
2,087,524	+				+1.2
2,087,532	-				+2.0
2,087,545	+				+1.2
2,087,545	+				+0.4
2,087,545	+				+1.6
2,087,545	+				-1.4
2,087,553	-				-1.9
2,087,557	-				+0.1
2,087,557	-				+0.3
2,087,557	-				+0.2
2,087,557	-				-1.2
2,087,573	-				-0.9
2,087,584	-				+0.3
2,087,584	-				-1.0
2,087,584	-				+3.0
2,087,614	-				-1.1
2,087,615	-				-1.2
2,087,634	+				+1.0
2,087,679	+				+0.0
2,087,679	+				+0.4
2,087,687	-				+0.3
2,087,698	+				-0.3
2,087,716	+				+0.7
2,087,762	+				-0.7
2,087,762	+				-1.7
2,087,762	+				-1.2
2,087,762	+				-1.8
2,087,762	+				-1.5
2,087,762	+				-1.3
2,087,770	-				-0.7
2,087,770	-				+1.5
2,087,777	-				-2.3
2,087,798	+				+0.2
2,087,798	+				-0.5
2,087,824	-				-1.6
2,087,864	-				-0.9
2,087,867	-				-1.7
2,087,899	+				-0.7
2,087,899	+				-1.0
2,087,907	-				-1.1
2,087,907	-				-0.7
2,087,907	-				+0.1
2,087,913	+				-2.1
2,087,937	-				-1.8
2,087,937	-				-1.5
2,087,937	-				+0.2
2,087,938	-				-0.3
2,087,982	+				-2.0
2,087,986	+				-0.3
2,087,994	-				-1.1
2,087,994	-				+0.0
2,087,994	-				-1.1
2,087,996	+				-2.4
2,087,996	+				+0.4
2,087,996	+				+1.0
2,087,996	+				-1.0
2,087,996	+				-1.4
2,087,996	+				-2.0
2,087,996	+				-0.3
2,087,996	+				-1.6
2,087,996	+				-1.9
2,087,996	+				-1.1
2,087,996	+				-0.7
2,087,996	+				-0.2
2,087,996	+				-0.0
2,087,996	+				+0.2
2,087,996	+				+0.7
2,087,996	+				+0.4
2,087,996	+				-1.0
2,087,996	+				-0.9
2,087,996	+				+1.4
2,087,996	+				-0.6
2,087,996	+				-1.2
2,088,002	+				-1.3
2,088,002	+				+1.0
2,088,002	+				+0.5
2,088,002	+				-0.0
2,088,004	-				+0.1
2,088,004	-				+0.6
2,088,004	-				-1.0
2,088,004	-				+0.9
2,088,004	-				+0.0
2,088,004	-				-1.2
2,088,004	-				-0.6
2,088,004	-				-0.9
2,088,004	-				-1.9
2,088,004	-				+0.6
2,088,004	-				-0.8
2,088,004	-				-0.6
2,088,004	-				-1.6
2,088,004	-				-1.6
2,088,004	-				+0.4
2,088,004	-				-2.8
2,088,004	-				-0.2
2,088,004	-				-0.6
2,088,004	-				+0.3
2,088,004	-				+0.2
2,088,004	-				-0.3
2,088,004	-				-0.5
2,088,004	-				-0.1
2,088,004	-				-1.8
2,088,004	-				-0.7
2,088,004	-				+0.6
2,088,004	-				-0.2
2,088,004	-				-1.6
2,088,004	-				+0.5