Strain Fitness in Shewanella oneidensis MR-1 around SO1944

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,046,090	-		SO1942	0.47	-0.6
2,046,131	-		SO1942	0.51	-2.4
2,046,154	+		SO1942	0.52	+2.0
2,046,262	+		SO1942	0.61	+1.3
2,046,294	-		SO1942	0.63	+1.4
2,046,302	+		SO1942	0.64	-0.9
2,046,308	+		SO1942	0.65	-1.2
2,046,323	+		SO1942	0.66	-0.1
2,046,376	+		SO1942	0.70	+1.0
2,046,376	+		SO1942	0.70	+0.4
2,046,376	+		SO1942	0.70	-0.0
2,046,376	+		SO1942	0.70	+0.5
2,046,514	+		SO1942	0.81	-1.0
2,046,522	-		SO1942	0.82	-1.6
2,046,532	+		SO1942	0.82	+1.4
2,046,534	+		SO1942	0.83	-1.5
2,046,540	+		SO1942	0.83	+0.1
2,046,540	-		SO1942	0.83	-1.1
2,046,542	-		SO1942	0.83	+1.7
2,046,548	-		SO1942	0.84	-0.7
2,046,650	-				+0.0
2,046,855	+				-2.5
2,046,871	-				-1.2
2,047,103	-				-1.1
2,047,184	+		SO1944	0.16	+0.5
2,047,191	-		SO1944	0.17	+1.4
2,047,246	-		SO1944	0.25	+0.6
2,047,365	-		SO1944	0.42	-0.2
2,047,366	-		SO1944	0.42	+2.0
2,047,366	-		SO1944	0.42	-0.9
2,047,370	+		SO1944	0.42	+0.8
2,047,370	+		SO1944	0.42	-1.9
2,047,378	-		SO1944	0.44	+0.3
2,047,378	-		SO1944	0.44	+0.5
2,047,378	-		SO1944	0.44	-1.3
2,047,378	-		SO1944	0.44	+0.0
2,047,404	+		SO1944	0.47	+0.5
2,047,404	+		SO1944	0.47	-0.1
2,047,404	+		SO1944	0.47	+0.3
2,047,404	+		SO1944	0.47	+1.2
2,047,404	+		SO1944	0.47	+1.0
2,047,412	-		SO1944	0.48	-2.2
2,047,412	-		SO1944	0.48	+1.0
2,047,412	-		SO1944	0.48	+0.4
2,047,534	+		SO1944	0.66	+0.5
2,047,534	+		SO1944	0.66	-0.3
2,047,542	-		SO1944	0.67	+0.5
2,047,542	-		SO1944	0.67	+0.3
2,047,542	-		SO1944	0.67	+0.0
2,047,669	-		SO1944	0.85	+1.1
2,047,757	-				-2.7
2,047,871	+				+0.3
2,048,213	+	phoQ	SO1945	0.32	+1.3
2,048,215	-	phoQ	SO1945	0.33	+1.3
2,048,379	-	phoQ	SO1945	0.45	+0.1
2,048,424	-	phoQ	SO1945	0.48	+1.7
2,048,446	-	phoQ	SO1945	0.50	-0.5
2,048,452	-	phoQ	SO1945	0.50	+1.3
2,048,459	-	phoQ	SO1945	0.51	-0.9
2,048,574	-	phoQ	SO1945	0.59	+3.8
2,048,619	+	phoQ	SO1945	0.62	-0.9