Strain Fitness in Shewanella oneidensis MR-1 around SO1912

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,009,629	+				-1.7
2,009,706	+		SO1911	0.11	+0.5
2,009,741	-		SO1911	0.15	+0.4
2,009,871	-		SO1911	0.30	+0.3
2,009,872	-		SO1911	0.30	+0.5
2,009,896	-		SO1911	0.33	-0.1
2,009,913	-		SO1911	0.35	-0.3
2,009,976	+		SO1911	0.42	-1.0
2,010,031	-		SO1911	0.48	-0.3
2,010,080	+		SO1911	0.54	-1.5
2,010,080	+		SO1911	0.54	-1.3
2,010,088	-		SO1911	0.55	+0.1
2,010,088	-		SO1911	0.55	-1.0
2,010,273	+		SO1911	0.76	+2.4
2,010,283	+		SO1911	0.78	-0.2
2,010,362	+		SO1911	0.87	-1.5
2,010,433	+				+1.0
2,010,538	+				+1.8
2,010,538	+				-0.6
2,010,546	-				-0.8
2,010,548	+				-0.2
2,010,557	+				+0.1
2,010,565	-				+0.4
2,010,577	-				-2.1
2,010,615	+				-1.3
2,010,632	+				+0.8
2,010,713	+	tesB	SO1912	0.13	-1.3
2,010,721	-	tesB	SO1912	0.14	+1.1
2,010,735	-	tesB	SO1912	0.16	-0.5
2,010,762	+	tesB	SO1912	0.19	+0.5
2,010,978	+	tesB	SO1912	0.44	+0.9
2,010,984	-	tesB	SO1912	0.44	-0.9
2,011,085	+	tesB	SO1912	0.56	+1.1
2,011,151	+	tesB	SO1912	0.64	-0.9
2,011,164	-	tesB	SO1912	0.65	+0.5
2,011,340	-	tesB	SO1912	0.85	+2.7
2,011,351	+	tesB	SO1912	0.87	+1.4
2,011,382	-				-0.7
2,011,445	-				+0.5
2,011,541	+		SO1913	0.17	-0.2
2,011,544	-		SO1913	0.18	+3.0
2,011,550	-		SO1913	0.19	+2.2
2,011,597	-		SO1913	0.31	+3.0
2,011,607	-		SO1913	0.33	+2.0
2,011,832	+		SO1913	0.90	-1.3
2,011,847	-				+0.7
2,011,854	+				-0.1
2,011,862	-				+0.2
2,011,862	-				-0.3
2,011,862	-				-0.0
2,011,862	-				+0.2
2,011,862	-				-0.0
2,011,862	-				+0.7
2,011,862	-				+0.8
2,011,926	+				-0.3
2,011,934	-				+1.3
2,011,937	-				-0.8
2,011,985	-				+1.0
2,012,140	-				+1.5
2,012,155	+				+0.4