Strain Fitness in Shewanella oneidensis MR-1 around SO1882

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,977,397	-		SO1881	0.14	-0.3
1,977,398	-		SO1881	0.14	+0.0
1,977,445	-		SO1881	0.19	-0.0
1,977,742	+		SO1881	0.46	-0.6
1,977,789	+		SO1881	0.51	-2.2
1,977,797	-		SO1881	0.51	-1.4
1,978,037	-		SO1881	0.73	+1.6
1,978,181	-		SO1881	0.87	+0.4
1,978,195	+		SO1881	0.88	+1.5
1,978,233	+				+0.5
1,978,387	+				-0.8
1,978,405	-				-1.4
1,978,438	-				+0.5
1,978,501	-				-1.3
1,978,551	+				+0.4
1,978,554	-				-1.3
1,978,571	-				+0.6
1,978,701	-		SO1882	0.12	-1.4
1,978,736	-		SO1882	0.13	-1.5
1,978,755	+		SO1882	0.14	-1.8
1,978,768	+		SO1882	0.14	+0.7
1,978,768	+		SO1882	0.14	-1.4
1,978,768	+		SO1882	0.14	-0.5
1,978,768	+		SO1882	0.14	+0.4
1,978,776	-		SO1882	0.15	-0.5
1,978,776	-		SO1882	0.15	-0.6
1,978,776	-		SO1882	0.15	-1.9
1,978,776	-		SO1882	0.15	+0.5
1,978,909	+		SO1882	0.19	-0.5
1,978,961	+		SO1882	0.21	+1.1
1,978,978	+		SO1882	0.21	+1.7
1,978,978	+		SO1882	0.21	-1.7
1,978,986	-		SO1882	0.22	-0.6
1,978,986	-		SO1882	0.22	+1.1
1,978,986	-		SO1882	0.22	-0.0
1,978,986	-		SO1882	0.22	-0.5
1,979,118	+		SO1882	0.26	-1.8
1,979,126	-		SO1882	0.26	-0.7
1,979,295	-		SO1882	0.31	+0.9
1,979,331	-		SO1882	0.33	+1.8
1,979,359	-		SO1882	0.34	-2.7
1,979,404	-		SO1882	0.35	+0.4
1,979,672	+		SO1882	0.44	+0.6
1,979,714	+		SO1882	0.45	-0.7
1,979,758	+		SO1882	0.46	+3.1
1,979,776	+		SO1882	0.47	+0.3
1,979,776	+		SO1882	0.47	+1.3
1,979,786	+		SO1882	0.47	-2.4
1,979,791	+		SO1882	0.48	-0.0
1,979,807	-		SO1882	0.48	+0.1
1,979,807	-		SO1882	0.48	-0.4
1,979,900	+		SO1882	0.51	+0.8
1,980,129	+		SO1882	0.58	-0.3
1,980,129	+		SO1882	0.58	-0.3
1,980,197	-		SO1882	0.61	+0.6
1,980,255	+		SO1882	0.62	-1.2
1,980,284	-		SO1882	0.63	-0.0
1,980,334	+		SO1882	0.65	+1.6
1,980,411	-		SO1882	0.68	-1.7
1,980,472	+		SO1882	0.70	-1.5
1,980,480	-		SO1882	0.70	+0.7
1,980,480	-		SO1882	0.70	-1.2
1,980,480	-		SO1882	0.70	+0.2
1,980,540	+		SO1882	0.72	-0.3
1,980,651	+		SO1882	0.75	-0.5
1,981,016	-		SO1882	0.87	+1.7
1,981,281	-				+0.8
1,981,318	-				-0.3
1,981,352	-				-0.6
1,981,409	+				+0.9
1,981,409	+				+0.3
1,981,417	-				-0.4
1,981,417	-				+1.6
1,981,584	-		SO1883	0.22	-0.2
1,981,590	+		SO1883	0.23	-0.2
1,981,599	-		SO1883	0.25	-0.1
1,981,625	+		SO1883	0.31	+0.2
1,981,625	+		SO1883	0.31	+0.7
1,981,658	+		SO1883	0.39	-0.6
1,981,775	-		SO1883	0.66	+0.8
1,981,878	+		SO1883	0.89	-0.2
1,981,887	-				-1.9
1,981,936	+				-1.4
1,981,941	+				-0.1
1,981,949	-				+1.3
1,982,110	-		SO1884	0.11	-0.3
1,982,128	+		SO1884	0.13	-0.4
1,982,288	-		SO1884	0.35	+0.4
1,982,401	+		SO1884	0.50	+0.7
1,982,401	+		SO1884	0.50	-0.2