Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcp and SO1878 are separated by 3 nucleotides SO1878 and dapA are separated by 171 nucleotides dapA and nlpB are separated by 3 nucleotides
SO1877: bcp - bacterioferritin comigratory protein (NCBI ptt file), at 1,973,442 to 1,973,912
bcp
SO1878: SO1878 - glycine cleavage system transcriptional repressor, putative (NCBI ptt file), at 1,973,916 to 1,974,467
SO1878
SO1879: dapA - dihydrodipicolinate synthase (NCBI ptt file), at 1,974,639 to 1,975,523
dapA
SO1880: nlpB - lipoprotein-34 NlpB (NCBI ptt file), at 1,975,527 to 1,976,624
nlpB
Position (kb) 1974
1975
1976 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1973.647 kb on - strand, within bcp at 1973.698 kb on - strand, within bcp at 1973.726 kb on - strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.760 kb on + strand, within bcp at 1973.765 kb on + strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.768 kb on - strand, within bcp at 1973.805 kb on + strand, within bcp at 1973.814 kb on - strand, within bcp at 1973.897 kb on + strand at 1973.970 kb on - strand at 1974.116 kb on - strand, within SO1878 at 1974.130 kb on + strand, within SO1878 at 1974.140 kb on + strand, within SO1878 at 1974.148 kb on - strand, within SO1878 at 1974.313 kb on + strand, within SO1878 at 1974.437 kb on - strand at 1974.445 kb on + strand at 1974.553 kb on - strand at 1974.579 kb on - strand at 1975.817 kb on + strand, within nlpB at 1975.940 kb on - strand, within nlpB at 1975.974 kb on + strand, within nlpB at 1975.982 kb on - strand, within nlpB at 1976.153 kb on + strand, within nlpB at 1976.161 kb on - strand, within nlpB at 1976.161 kb on - strand, within nlpB at 1976.161 kb on - strand, within nlpB at 1976.187 kb on + strand, within nlpB at 1976.242 kb on + strand, within nlpB at 1976.242 kb on + strand, within nlpB at 1976.370 kb on + strand, within nlpB at 1976.370 kb on + strand, within nlpB at 1976.378 kb on - strand, within nlpB
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 1,973,647 - bcp SO1877 0.44 +0.7 1,973,698 - bcp SO1877 0.54 -0.6 1,973,726 - bcp SO1877 0.60 +0.1 1,973,760 + bcp SO1877 0.68 +0.1 1,973,760 + bcp SO1877 0.68 -0.7 1,973,760 + bcp SO1877 0.68 +0.2 1,973,760 + bcp SO1877 0.68 +4.6 1,973,760 + bcp SO1877 0.68 +0.9 1,973,760 + bcp SO1877 0.68 -1.2 1,973,760 + bcp SO1877 0.68 +2.7 1,973,760 + bcp SO1877 0.68 -1.6 1,973,760 + bcp SO1877 0.68 -1.5 1,973,765 + bcp SO1877 0.69 -0.3 1,973,768 - bcp SO1877 0.69 +0.4 1,973,768 - bcp SO1877 0.69 +0.1 1,973,768 - bcp SO1877 0.69 +0.1 1,973,768 - bcp SO1877 0.69 -0.6 1,973,768 - bcp SO1877 0.69 +0.6 1,973,768 - bcp SO1877 0.69 +0.9 1,973,768 - bcp SO1877 0.69 -0.1 1,973,768 - bcp SO1877 0.69 +1.4 1,973,768 - bcp SO1877 0.69 -0.4 1,973,805 + bcp SO1877 0.77 -1.3 1,973,814 - bcp SO1877 0.79 +0.6 1,973,897 + -0.2 1,973,970 - -0.4 1,974,116 - SO1878 0.36 +2.0 1,974,130 + SO1878 0.39 -2.0 1,974,140 + SO1878 0.41 +1.3 1,974,148 - SO1878 0.42 +1.3 1,974,313 + SO1878 0.72 +2.0 1,974,437 - +3.0 1,974,445 + +1.0 1,974,553 - +1.2 1,974,579 - +0.2 1,975,817 + nlpB SO1880 0.26 -2.0 1,975,940 - nlpB SO1880 0.38 -1.8 1,975,974 + nlpB SO1880 0.41 -0.0 1,975,982 - nlpB SO1880 0.41 -1.4 1,976,153 + nlpB SO1880 0.57 -2.0 1,976,161 - nlpB SO1880 0.58 +1.0 1,976,161 - nlpB SO1880 0.58 +2.0 1,976,161 - nlpB SO1880 0.58 -0.5 1,976,187 + nlpB SO1880 0.60 -1.9 1,976,242 + nlpB SO1880 0.65 +0.4 1,976,242 + nlpB SO1880 0.65 -0.0 1,976,370 + nlpB SO1880 0.77 -0.3 1,976,370 + nlpB SO1880 0.77 +0.4 1,976,378 - nlpB SO1880 0.78 -1.2
Or see this region's nucleotide sequence