Strain Fitness in Shewanella oneidensis MR-1 around SO1844

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,932,213	+		SO1843	0.27	-0.2
1,932,244	+		SO1843	0.33	+2.3
1,932,296	-		SO1843	0.43	-0.5
1,932,298	+		SO1843	0.44	+0.8
1,932,518	+		SO1843	0.86	-0.2
1,932,629	-				+0.4
1,932,745	+				+2.0
1,932,899	-				-1.9
1,933,000	+				+0.7
1,933,036	-				-2.2
1,933,123	+				-1.0
1,933,188	+				-2.3
1,933,196	-				-2.1
1,933,196	-				-1.1
1,933,201	-				+1.0
1,933,214	-				-3.1
1,933,278	+				-0.3
1,933,295	+		SO1844	0.10	-1.5
1,933,345	-		SO1844	0.12	-0.0
1,933,424	+		SO1844	0.15	-2.2
1,933,432	-		SO1844	0.15	-2.0
1,933,432	-		SO1844	0.15	-1.8
1,933,432	-		SO1844	0.15	-0.2
1,933,444	+		SO1844	0.16	-0.5
1,933,444	+		SO1844	0.16	+0.3
1,933,452	-		SO1844	0.16	-0.4
1,933,554	-		SO1844	0.20	-1.6
1,934,106	+		SO1844	0.39	-0.9
1,934,189	-		SO1844	0.42	-0.8
1,934,264	+		SO1844	0.44	-0.7
1,934,352	-		SO1844	0.48	-1.0
1,934,367	-		SO1844	0.48	-2.5
1,934,382	-		SO1844	0.49	-1.5
1,934,404	-		SO1844	0.49	-1.4
1,934,420	+		SO1844	0.50	-0.8
1,934,428	-		SO1844	0.50	+0.4
1,934,428	-		SO1844	0.50	-0.9
1,934,428	-		SO1844	0.50	-1.2
1,934,556	+		SO1844	0.55	-0.1
1,934,594	+		SO1844	0.56	-1.1
1,934,836	+		SO1844	0.65	-0.7
1,935,014	-		SO1844	0.71	+0.3
1,935,146	+		SO1844	0.75	+1.0
1,935,154	-		SO1844	0.76	+0.4
1,935,171	-		SO1844	0.76	+1.0
1,935,393	-		SO1844	0.84	-1.8
1,935,563	+				-0.9
1,935,563	+				+0.4
1,935,566	-				-2.5
1,935,641	+				-1.4
1,935,641	+				+0.6
1,935,676	+				+0.6
1,935,754	-				+0.8
1,935,781	-				-0.0
1,935,845	+				-0.1
1,935,911	-				-0.1
1,935,981	-				+1.4
1,935,981	-				+1.9
1,936,215	+		SO1845	0.47	-0.9
1,936,223	-		SO1845	0.49	+0.3
1,936,238	-		SO1845	0.52	-0.6
1,936,248	-		SO1845	0.54	-0.6
1,936,248	-		SO1845	0.54	+1.3
1,936,404	+				+0.6
1,936,595	-		SO1846	0.12	-1.4
1,936,735	+		SO1846	0.31	-2.4