Strain Fitness in Shewanella oneidensis MR-1 around SO1782

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,867,275	+		SO1781	0.55	+0.2
1,867,275	+		SO1781	0.55	-1.2
1,867,275	+		SO1781	0.55	+1.8
1,867,363	+		SO1781	0.59	+0.2
1,867,409	-		SO1781	0.61	-1.1
1,867,409	-		SO1781	0.61	-0.1
1,867,529	+		SO1781	0.67	-0.2
1,867,529	+		SO1781	0.67	+0.8
1,867,537	-		SO1781	0.67	+0.0
1,867,537	-		SO1781	0.67	-0.1
1,867,629	+		SO1781	0.72	+1.1
1,867,629	+		SO1781	0.72	+0.7
1,867,629	+		SO1781	0.72	+0.2
1,867,637	-		SO1781	0.72	+0.4
1,867,637	-		SO1781	0.72	+0.0
1,867,697	+		SO1781	0.75	+0.9
1,867,828	-		SO1781	0.81	+0.2
1,867,877	-		SO1781	0.83	-1.3
1,868,065	+				+1.2
1,868,065	+				+0.1
1,868,073	-				-1.3
1,868,073	-				+0.1
1,868,073	-				+0.7
1,868,073	-				+0.5
1,868,088	-				+0.6
1,868,341	+				-1.8
1,868,361	+	mtrD	SO1782	0.12	+1.5
1,868,443	+	mtrD	SO1782	0.21	+0.6
1,868,451	-	mtrD	SO1782	0.22	-1.2
1,868,459	-	mtrD	SO1782	0.23	-1.6
1,868,499	+	mtrD	SO1782	0.27	+0.9
1,868,589	-	mtrD	SO1782	0.37	+0.6
1,868,669	+	mtrD	SO1782	0.45	-1.3
1,868,694	-	mtrD	SO1782	0.48	+0.7
1,868,744	-	mtrD	SO1782	0.54	+0.2
1,869,063	-	mtrD	SO1782	0.88	-0.2
1,869,127	+				-0.0
1,869,133	+				+0.9
1,869,141	-				+0.2
1,869,368	-				+1.7
1,869,405	+				-0.4
1,869,405	+				-1.1
1,869,424	+				+0.1
1,869,426	+				+1.9
1,869,426	+				+0.5
1,869,510	+				-1.3
1,869,587	+				-0.3
1,869,597	-				-0.8
1,869,860	+				+2.0