Strain Fitness in Shewanella oneidensis MR-1 around SO1618

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,700,122	+				-0.0
1,700,147	-				+0.2
1,700,177	+				-2.4
1,700,182	+				-2.1
1,700,198	+				-1.4
1,700,208	+				-2.1
1,700,215	+				-0.5
1,700,253	+				-2.4
1,700,253	+				-2.4
1,700,253	+				-2.3
1,700,261	-				-0.9
1,700,298	-				+2.8
1,700,318	-				+2.8
1,700,421	+				-0.9
1,700,443	-				+2.8
1,700,500	+				+0.2
1,700,601	-				-0.2
1,700,653	-				+0.0
1,700,677	+		SO1617	0.13	-1.3
1,700,939	-		SO1617	0.80	-1.4
1,701,024	+				-0.9
1,701,024	+				-0.3
1,701,024	+				+0.7
1,701,024	+				+1.1
1,701,063	-				-0.1
1,701,178	+		SO1618	0.16	+0.2
1,701,199	-		SO1618	0.19	+0.0
1,701,236	+		SO1618	0.22	-2.1
1,701,250	+		SO1618	0.24	-0.1
1,701,258	-		SO1618	0.24	+0.7
1,701,258	-		SO1618	0.24	+0.8
1,701,354	+		SO1618	0.34	+1.2
1,701,379	-		SO1618	0.36	+1.6
1,701,414	-		SO1618	0.40	-0.2
1,701,414	-		SO1618	0.40	-0.9
1,701,414	-		SO1618	0.40	+0.3
1,701,414	-		SO1618	0.40	+1.2
1,701,427	-		SO1618	0.41	+0.1
1,701,451	+		SO1618	0.43	-1.0
1,701,572	-		SO1618	0.55	+1.2
1,701,889	+		SO1618	0.87	+0.4
1,701,946	-				-2.3
1,701,946	-				-1.4
1,701,958	+				-0.4
1,702,081	-				+0.8
1,702,081	-				-0.9
1,702,129	+				-0.5
1,702,129	+				-0.1
1,702,137	-				-0.7
1,702,198	-				-1.0
1,702,268	+		SO1619	0.31	+0.2
1,702,362	+		SO1619	0.60	+1.1
1,702,362	+		SO1619	0.60	+0.3
1,702,362	+		SO1619	0.60	+0.7
1,702,370	-		SO1619	0.63	+1.5
1,702,512	+				+2.3
1,702,553	+				+0.0
1,702,599	+		SO_1620	0.15	+0.5
1,702,827	-		SO_1620	0.42	-0.1
1,702,889	-		SO_1620	0.49	-0.2
1,702,889	-		SO_1620	0.49	-2.3
1,702,911	+		SO_1620	0.52	+1.5