Strain Fitness in Shewanella oneidensis MR-1 around SO1613

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,695,184	+		SO1611	0.51	-0.6
1,695,199	+		SO1611	0.55	-0.5
1,695,217	+		SO1611	0.60	-0.7
1,695,225	-		SO1611	0.62	-0.9
1,695,247	-		SO1611	0.67	-0.4
1,695,247	-		SO1611	0.67	-1.0
1,695,297	-		SO1611	0.80	-0.1
1,695,299	+		SO1611	0.81	-1.9
1,695,321	-		SO1611	0.87	+2.4
1,695,332	+		SO1611	0.90	-0.6
1,695,343	+				-0.3
1,695,413	+				+1.1
1,695,499	+				-0.7
1,695,576	+		SO1612	0.14	-0.0
1,695,583	-		SO1612	0.16	-1.7
1,695,584	-		SO1612	0.16	-0.4
1,695,684	+		SO1612	0.41	+0.0
1,695,684	+		SO1612	0.41	-2.0
1,695,684	+		SO1612	0.41	+1.3
1,695,684	+		SO1612	0.41	-0.2
1,695,690	+		SO1612	0.42	-1.2
1,695,732	+		SO1612	0.53	-0.2
1,695,732	+		SO1612	0.53	-1.4
1,695,745	-		SO1612	0.56	-0.4
1,695,765	+		SO1612	0.61	-0.7
1,695,799	+		SO1612	0.70	-1.9
1,695,892	+				-0.7
1,695,900	-				-1.1
1,695,902	+				-0.8
1,695,924	+				-1.1
1,695,924	+				+0.9
1,695,991	-				+0.5
1,696,014	+		SO1613	0.17	-0.8
1,696,024	+		SO1613	0.20	+1.0
1,696,130	+		SO1613	0.55	-0.9
1,696,138	-		SO1613	0.58	-0.6
1,696,138	-		SO1613	0.58	-0.2
1,696,156	-		SO1613	0.64	-0.3
1,696,240	-				+0.6
1,696,309	+				+0.5
1,696,310	-				+2.4
1,696,380	+				-0.5
1,696,390	+				+1.4
1,696,398	+				+0.4
1,696,404	+				-0.6
1,696,461	+		SO1614	0.18	-0.8
1,696,462	+		SO1614	0.18	-1.1
1,696,469	-		SO1614	0.19	+0.2
1,696,523	+		SO1614	0.28	+0.9
1,696,529	-		SO1614	0.28	-0.0
1,696,539	-		SO1614	0.30	-1.5
1,696,683	+		SO1614	0.53	-1.4
1,696,783	+		SO1614	0.68	+0.3
1,696,788	+		SO1614	0.69	-0.4
1,696,796	-		SO1614	0.70	-0.7
1,696,823	-		SO1614	0.74	-0.4
1,696,852	+		SO1614	0.79	+1.2
1,696,852	+		SO1614	0.79	-0.3
1,696,860	-		SO1614	0.80	-1.7
1,696,860	-		SO1614	0.80	-1.6
1,696,878	+		SO1614	0.83	+0.3
1,697,015	-		SO1615	0.12	-0.6
1,697,015	-		SO1615	0.12	+0.6
1,697,099	-		SO1615	0.40	-0.3
1,697,099	-		SO1615	0.40	-0.9
1,697,109	-		SO1615	0.43	+1.3
1,697,114	-		SO1615	0.44	-0.2
1,697,151	+		SO1615	0.57	-0.8
1,697,215	+		SO1615	0.77	+0.2
1,697,253	-				+1.5