Strain Fitness in Shewanella oneidensis MR-1 around SO1558

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,633,493	-		SO1557	0.17	-1.8
1,633,563	-		SO1557	0.24	-0.3
1,633,647	-		SO1557	0.33	-1.0
1,633,680	+		SO1557	0.36	+0.3
1,633,688	-		SO1557	0.37	+1.4
1,633,756	+		SO1557	0.44	-0.1
1,633,772	+		SO1557	0.45	-1.2
1,633,772	+		SO1557	0.45	+0.7
1,633,772	+		SO1557	0.45	+0.2
1,633,780	-		SO1557	0.46	-1.4
1,633,875	+		SO1557	0.56	+0.7
1,633,931	+		SO1557	0.62	+0.9
1,633,931	+		SO1557	0.62	-0.1
1,633,982	-		SO1557	0.67	+2.2
1,633,988	+		SO1557	0.68	+0.3
1,633,998	+		SO1557	0.69	-0.2
1,634,019	+		SO1557	0.71	-0.8
1,634,067	-		SO1557	0.76	+1.0
1,634,067	-		SO1557	0.76	-0.0
1,634,104	+		SO1557	0.80	-0.1
1,634,154	-		SO1557	0.85	-0.1
1,634,172	-		SO1557	0.87	+1.9
1,634,185	+		SO1557	0.88	+1.2
1,634,193	-		SO1557	0.89	+0.1
1,634,237	+				+0.3
1,634,292	+				+0.3
1,634,300	-				+0.2
1,634,300	-				+0.7
1,634,495	-				+1.1
1,634,568	-	phoB	SO1558	0.16	-0.8
1,634,613	-	phoB	SO1558	0.22	+1.0
1,634,613	-	phoB	SO1558	0.22	+0.8
1,634,615	+	phoB	SO1558	0.22	+1.2
1,634,615	+	phoB	SO1558	0.22	-2.5
1,634,615	+	phoB	SO1558	0.22	+1.1
1,634,623	-	phoB	SO1558	0.23	+2.2
1,634,623	-	phoB	SO1558	0.23	+1.6
1,634,623	-	phoB	SO1558	0.23	+0.1
1,634,623	-	phoB	SO1558	0.23	+0.9
1,634,648	-	phoB	SO1558	0.27	+1.0
1,634,756	+	phoB	SO1558	0.42	+1.7
1,634,763	-	phoB	SO1558	0.43	+0.7
1,634,764	+	phoB	SO1558	0.43	+2.3
1,634,814	-	phoB	SO1558	0.50	+1.6
1,634,846	-	phoB	SO1558	0.54	+1.2
1,634,925	-	phoB	SO1558	0.65	+1.2
1,635,227	+				-0.0
1,635,237	+				-0.1
1,635,449	+	phoR	SO1559	0.15	-1.3
1,635,449	+	phoR	SO1559	0.15	-0.2
1,635,449	+	phoR	SO1559	0.15	+0.8
1,635,563	+	phoR	SO1559	0.24	+1.1
1,635,563	+	phoR	SO1559	0.24	-0.2
1,635,569	+	phoR	SO1559	0.24	-0.0
1,635,571	-	phoR	SO1559	0.24	+2.3
1,635,571	-	phoR	SO1559	0.24	+1.5
1,635,592	+	phoR	SO1559	0.26	+2.4
1,635,592	+	phoR	SO1559	0.26	+1.6
1,635,595	-	phoR	SO1559	0.26	+1.6
1,635,605	-	phoR	SO1559	0.27	+1.5
1,635,605	-	phoR	SO1559	0.27	+0.5
1,635,619	-	phoR	SO1559	0.28	+0.7
1,635,643	-	phoR	SO1559	0.30	+1.5
1,635,674	-	phoR	SO1559	0.32	-0.4
1,635,810	+	phoR	SO1559	0.43	+1.5
1,635,846	+	phoR	SO1559	0.46	+1.2
1,636,021	+	phoR	SO1559	0.59	-0.1
1,636,021	+	phoR	SO1559	0.59	+0.4
1,636,021	+	phoR	SO1559	0.59	+0.7
1,636,021	+	phoR	SO1559	0.59	+2.1
1,636,029	-	phoR	SO1559	0.60	-0.0
1,636,105	+	phoR	SO1559	0.66	+1.9
1,636,138	-	phoR	SO1559	0.68	+1.3
1,636,138	-	phoR	SO1559	0.68	+1.6
1,636,155	-	phoR	SO1559	0.69	+3.5