Strain Fitness in Shewanella oneidensis MR-1 around SO1493

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,556,977	+		SO1492	0.27	+0.5
1,557,321	+		SO1492	0.81	-0.5
1,557,340	+		SO1492	0.84	+3.0
1,557,340	+		SO1492	0.84	+0.8
1,557,340	+		SO1492	0.84	-0.8
1,557,348	-		SO1492	0.85	-0.5
1,557,387	+				-3.2
1,557,387	+				+1.5
1,557,465	+				-0.4
1,557,466	+				-0.9
1,557,484	-				+0.9
1,557,509	-				+0.7
1,557,640	+				-1.4
1,557,907	+				+3.3
1,557,998	-				+1.0
1,558,008	+				+1.2
1,558,013	+				-1.0
1,558,040	-				+0.8
1,558,057	+				-0.2
1,558,069	+				-0.9
1,558,098	-				-0.7
1,558,114	+				+0.1
1,558,126	+				-0.6
1,558,163	+				-1.9
1,558,163	+				-0.9
1,558,163	+				-0.9
1,558,218	-	malQ	SO1493	0.12	+0.7
1,558,273	-	malQ	SO1493	0.14	-0.3
1,558,383	+	malQ	SO1493	0.19	+1.3
1,558,466	+	malQ	SO1493	0.22	+0.2
1,558,478	+	malQ	SO1493	0.23	-1.0
1,558,483	+	malQ	SO1493	0.23	+0.2
1,558,491	-	malQ	SO1493	0.24	+0.8
1,558,493	+	malQ	SO1493	0.24	+0.5
1,558,502	-	malQ	SO1493	0.24	+0.2
1,558,506	-	malQ	SO1493	0.24	+0.7
1,558,510	+	malQ	SO1493	0.24	-1.1
1,558,544	+	malQ	SO1493	0.26	-1.2
1,558,644	+	malQ	SO1493	0.30	+0.5
1,558,687	-	malQ	SO1493	0.32	-0.9
1,558,700	+	malQ	SO1493	0.33	-0.7
1,558,700	+	malQ	SO1493	0.33	+2.2
1,558,708	-	malQ	SO1493	0.33	-2.0
1,558,708	-	malQ	SO1493	0.33	-1.1
1,558,708	-	malQ	SO1493	0.33	-1.1
1,558,708	-	malQ	SO1493	0.33	-0.6
1,558,768	-	malQ	SO1493	0.35	+0.5
1,558,844	+	malQ	SO1493	0.39	-0.4
1,558,852	-	malQ	SO1493	0.39	-0.8
1,558,852	-	malQ	SO1493	0.39	-0.2
1,558,852	-	malQ	SO1493	0.39	+0.2
1,558,852	-	malQ	SO1493	0.39	+0.1
1,558,852	-	malQ	SO1493	0.39	+1.4
1,558,852	-	malQ	SO1493	0.39	+0.5
1,558,852	-	malQ	SO1493	0.39	-1.3
1,558,877	+	malQ	SO1493	0.40	+0.7
1,558,877	+	malQ	SO1493	0.40	-1.5
1,558,956	+	malQ	SO1493	0.44	-0.2
1,558,968	+	malQ	SO1493	0.44	-0.4
1,558,981	-	malQ	SO1493	0.45	-0.9
1,559,047	-	malQ	SO1493	0.48	-0.5
1,559,136	-	malQ	SO1493	0.51	-0.2
1,559,137	+	malQ	SO1493	0.51	-0.3
1,559,148	+	malQ	SO1493	0.52	-1.7
1,559,312	-	malQ	SO1493	0.59	+0.0
1,559,322	-	malQ	SO1493	0.59	+0.8
1,559,539	-	malQ	SO1493	0.69	-0.5
1,559,614	+	malQ	SO1493	0.72	-0.9
1,559,655	+	malQ	SO1493	0.74	-1.4
1,559,655	+	malQ	SO1493	0.74	-1.0
1,559,655	+	malQ	SO1493	0.74	-0.2
1,559,757	-	malQ	SO1493	0.78	+0.2
1,559,878	-	malQ	SO1493	0.84	+0.5
1,559,931	+	malQ	SO1493	0.86	+0.5
1,559,931	+	malQ	SO1493	0.86	-0.7
1,559,939	-	malQ	SO1493	0.86	-1.2
1,559,999	+	malQ	SO1493	0.89	+0.6
1,560,026	-	malQ	SO1493	0.90	+0.9
1,560,098	+				+0.4
1,560,173	-				-0.5
1,560,173	-				+0.8
1,560,248	-				-1.4
1,560,288	+				+0.8
1,560,321	+				-0.1
1,560,321	+				+1.1
1,560,321	+				-0.5
1,560,329	-				+2.1
1,560,352	-				-2.4
1,560,422	+				+0.8
1,560,437	+				+0.2
1,560,437	+				-1.5
1,560,445	-				-1.2
1,560,445	-				+0.0
1,560,464	+				+0.6
1,560,472	-				-0.4
1,560,608	-	glgB	SO1494	0.15	+0.6
1,560,633	+	glgB	SO1494	0.16	+0.9
1,560,633	+	glgB	SO1494	0.16	-0.9
1,560,698	-	glgB	SO1494	0.19	-0.9
1,560,725	+	glgB	SO1494	0.20	-0.4
1,560,788	+	glgB	SO1494	0.23	-0.7
1,560,834	+	glgB	SO1494	0.25	-1.4
1,560,857	-	glgB	SO1494	0.26	-1.9
1,560,928	+	glgB	SO1494	0.29	-0.9
1,561,009	+	glgB	SO1494	0.33	-0.7
1,561,055	-	glgB	SO1494	0.35	-0.5
1,561,055	-	glgB	SO1494	0.35	-1.8