Strain Fitness in Shewanella oneidensis MR-1 around SO1492

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,555,809	-	adhB	SO1490	0.49	+1.0
1,556,008	+	adhB	SO1490	0.66	-0.4
1,556,027	+	adhB	SO1490	0.68	-1.8
1,556,075	+	adhB	SO1490	0.72	+0.2
1,556,142	+	adhB	SO1490	0.78	+0.1
1,556,142	+	adhB	SO1490	0.78	+1.9
1,556,142	+	adhB	SO1490	0.78	+1.4
1,556,142	+	adhB	SO1490	0.78	+0.6
1,556,150	-	adhB	SO1490	0.79	+0.8
1,556,150	-	adhB	SO1490	0.79	-0.1
1,556,150	-	adhB	SO1490	0.79	+1.1
1,556,150	-	adhB	SO1490	0.79	-1.6
1,556,152	+	adhB	SO1490	0.79	+0.1
1,556,171	-	adhB	SO1490	0.80	+2.4
1,556,184	+	adhB	SO1490	0.82	+0.4
1,556,187	-	adhB	SO1490	0.82	+1.5
1,556,260	+	adhB	SO1490	0.88	+0.6
1,556,263	-	adhB	SO1490	0.88	+0.5
1,556,317	-				+0.0
1,556,391	+				+0.3
1,556,560	+				-1.5
1,556,561	+				-0.1
1,556,561	+				+0.9
1,556,675	+				-0.8
1,556,683	-				-1.7
1,556,683	-				+0.5
1,556,769	+				+1.1
1,556,795	+				+1.0
1,556,831	+				-0.1
1,556,839	-				+0.9
1,556,878	-		SO1492	0.11	-1.9
1,556,897	+		SO1492	0.14	+0.1
1,556,910	-		SO1492	0.16	+0.1
1,556,930	-		SO1492	0.19	+0.4
1,556,977	+		SO1492	0.27	+0.5
1,557,321	+		SO1492	0.81	-0.5
1,557,340	+		SO1492	0.84	+3.0
1,557,340	+		SO1492	0.84	+0.8
1,557,340	+		SO1492	0.84	-0.8
1,557,348	-		SO1492	0.85	-0.5
1,557,387	+				-3.2
1,557,387	+				+1.5
1,557,465	+				-0.4
1,557,466	+				-0.9
1,557,484	-				+0.9
1,557,509	-				+0.7
1,557,640	+				-1.4
1,557,907	+				+3.3
1,557,998	-				+1.0
1,558,008	+				+1.2
1,558,013	+				-1.0
1,558,040	-				+0.8
1,558,057	+				-0.2
1,558,069	+				-0.9
1,558,098	-				-0.7
1,558,114	+				+0.1
1,558,126	+				-0.6
1,558,163	+				-1.9
1,558,163	+				-0.9
1,558,163	+				-0.9
1,558,218	-	malQ	SO1493	0.12	+0.7
1,558,273	-	malQ	SO1493	0.14	-0.3
1,558,383	+	malQ	SO1493	0.19	+1.3