Strain Fitness in Shewanella oneidensis MR-1 around SO1336

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,394,042	+				-1.1
1,394,048	+				-1.3
1,394,065	+				-0.1
1,394,080	+				-0.8
1,394,151	-	nhaA	SO1336	0.15	-0.8
1,394,208	-	nhaA	SO1336	0.20	-1.8
1,394,212	+	nhaA	SO1336	0.20	-1.5
1,394,212	+	nhaA	SO1336	0.20	+0.4
1,394,260	-	nhaA	SO1336	0.24	-0.3
1,394,410	+	nhaA	SO1336	0.37	-0.5
1,394,503	-	nhaA	SO1336	0.45	-0.2
1,394,564	+	nhaA	SO1336	0.50	+1.2
1,394,589	+	nhaA	SO1336	0.52	-1.8
1,394,597	-	nhaA	SO1336	0.53	+0.2
1,394,613	+	nhaA	SO1336	0.54	-1.1
1,394,621	-	nhaA	SO1336	0.55	+0.7
1,394,643	-	nhaA	SO1336	0.57	+1.3
1,394,683	+	nhaA	SO1336	0.60	-1.0
1,394,747	+	nhaA	SO1336	0.66	-1.9
1,394,782	-	nhaA	SO1336	0.69	-2.1
1,395,047	-				-2.4
1,395,062	+				-0.2
1,395,070	-				-0.6
1,395,194	-		SO1337	0.11	-0.8
1,395,266	+		SO1337	0.30	-2.4
1,395,274	-		SO1337	0.32	-2.1
1,395,421	+		SO1337	0.70	-1.7
1,395,490	+		SO1337	0.88	-1.4
1,395,738	-	nhaR	SO1338	0.12	-1.0
1,395,754	+	nhaR	SO1338	0.13	-0.5
1,395,872	-	nhaR	SO1338	0.26	-1.7
1,395,872	-	nhaR	SO1338	0.26	+0.4
1,396,016	-	nhaR	SO1338	0.42	-2.4
1,396,036	-	nhaR	SO1338	0.44	+1.2