Strain Fitness in Shewanella oneidensis MR-1 around SO1228

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,275,237	+	radA	SO1226	0.75	-0.7
1,275,293	+	radA	SO1226	0.79	+0.3
1,275,304	+	radA	SO1226	0.80	+0.0
1,275,328	-	radA	SO1226	0.82	-1.0
1,275,377	+	radA	SO1226	0.86	-0.2
1,275,408	-	radA	SO1226	0.88	-0.1
1,275,441	-				-0.5
1,275,455	+				-0.2
1,275,467	+				+0.1
1,275,557	+				-0.0
1,275,621	-				+2.6
1,275,652	-				+0.3
1,275,706	+		SO1227	0.13	+2.2
1,275,730	+		SO1227	0.19	+1.0
1,275,738	-		SO1227	0.21	+0.7
1,275,759	-		SO1227	0.26	+0.8
1,275,812	+		SO1227	0.40	+0.5
1,275,865	-		SO1227	0.53	+1.2
1,275,885	-		SO1227	0.58	-0.6
1,275,967	-		SO1227	0.79	+0.5
1,276,092	-				+0.5
1,276,219	+				+0.6
1,276,230	+				+0.0
1,276,322	-	torR	SO1228	0.13	+0.2
1,276,447	-	torR	SO1228	0.31	+0.6
1,276,527	+	torR	SO1228	0.42	-1.4
1,276,562	-	torR	SO1228	0.47	+4.0
1,276,570	-	torR	SO1228	0.48	+0.1
1,276,618	+	torR	SO1228	0.55	+0.8
1,276,626	-	torR	SO1228	0.56	-0.8
1,276,633	-	torR	SO1228	0.57	+0.8
1,276,652	+	torR	SO1228	0.60	-0.6
1,276,733	-	torR	SO1228	0.71	-1.3
1,276,902	-				-0.0
1,276,945	+				-1.0
1,276,945	+				-1.2
1,276,953	-				-0.6
1,276,953	-				-0.2
1,276,999	-				+0.7
1,277,123	+	torT	SO1229	0.17	-0.7
1,277,168	-	torT	SO1229	0.22	-0.2
1,277,239	-	torT	SO1229	0.28	-0.3
1,277,269	-	torT	SO1229	0.31	-0.2
1,277,276	+	torT	SO1229	0.32	+0.6
1,277,279	-	torT	SO1229	0.32	+0.4
1,277,310	+	torT	SO1229	0.35	+0.6
1,277,364	+	torT	SO1229	0.40	+0.1
1,277,367	-	torT	SO1229	0.40	-0.1
1,277,443	+	torT	SO1229	0.47	+0.3
1,277,476	+	torT	SO1229	0.50	-0.8
1,277,484	-	torT	SO1229	0.51	+0.8
1,277,558	-	torT	SO1229	0.58	-0.5
1,277,566	+	torT	SO1229	0.58	+0.0
1,277,681	-	torT	SO1229	0.69	+0.2