Strain Fitness in Shewanella oneidensis MR-1 around SO1225

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,270,718	+				+1.0
1,270,966	-		SO1224	0.30	-1.1
1,271,043	+		SO1224	0.37	+0.2
1,271,133	+		SO1224	0.47	+1.1
1,271,277	-		SO1224	0.61	-0.1
1,271,355	-		SO1224	0.69	-0.4
1,271,357	+		SO1224	0.69	-0.3
1,271,453	+		SO1224	0.79	-0.6
1,271,453	+		SO1224	0.79	-3.2
1,271,453	+		SO1224	0.79	-0.5
1,271,453	+		SO1224	0.79	+1.0
1,271,461	-		SO1224	0.80	-0.2
1,271,461	-		SO1224	0.80	+0.7
1,271,461	-		SO1224	0.80	-1.9
1,271,461	-		SO1224	0.80	+0.2
1,271,461	-		SO1224	0.80	-0.6
1,271,653	+				-1.8
1,271,653	-				-0.2
1,271,661	-				+3.6
1,271,756	+				+0.1
1,271,828	+				+0.9
1,271,935	+		SO1225	0.11	-0.1
1,272,151	+		SO1225	0.20	+0.7
1,272,151	+		SO1225	0.20	-1.5
1,272,163	+		SO1225	0.21	-0.9
1,272,163	+		SO1225	0.21	-1.6
1,272,171	-		SO1225	0.21	-0.8
1,272,171	-		SO1225	0.21	+1.6
1,272,171	-		SO1225	0.21	+1.1
1,272,362	+		SO1225	0.29	+1.1
1,272,370	-		SO1225	0.29	+1.0
1,272,404	+		SO1225	0.31	+0.5
1,272,404	+		SO1225	0.31	+1.3
1,272,412	-		SO1225	0.31	-0.4
1,272,413	-		SO1225	0.31	-0.2
1,272,463	-		SO1225	0.33	+1.3
1,272,486	+		SO1225	0.34	-1.3
1,272,503	-		SO1225	0.35	-1.1
1,272,519	+		SO1225	0.36	-0.2
1,272,541	-		SO1225	0.37	+1.6
1,272,568	+		SO1225	0.38	-0.7
1,272,575	-		SO1225	0.38	+1.8
1,272,575	-		SO1225	0.38	+0.7
1,272,576	-		SO1225	0.38	+0.8
1,272,857	-		SO1225	0.50	+0.9
1,272,869	-		SO1225	0.50	+2.1
1,272,869	-		SO1225	0.50	+1.7
1,272,957	-		SO1225	0.54	+1.9
1,272,958	-		SO1225	0.54	+0.2
1,272,998	+		SO1225	0.56	+0.3
1,272,998	+		SO1225	0.56	+0.6
1,272,998	+		SO1225	0.56	+2.2
1,272,998	+		SO1225	0.56	+2.7
1,272,998	+		SO1225	0.56	+0.3
1,272,998	+		SO1225	0.56	+0.7
1,272,998	+		SO1225	0.56	-2.1
1,272,998	+		SO1225	0.56	+0.8
1,272,998	+		SO1225	0.56	+0.0
1,273,006	-		SO1225	0.56	+3.4
1,273,006	-		SO1225	0.56	+1.8
1,273,006	-		SO1225	0.56	+1.4
1,273,006	-		SO1225	0.56	+0.9
1,273,006	-		SO1225	0.56	-0.1
1,273,006	-		SO1225	0.56	-0.1
1,273,039	-		SO1225	0.57	+0.2
1,273,044	-		SO1225	0.58	-1.4
1,273,055	+		SO1225	0.58	-0.6
1,273,055	+		SO1225	0.58	-0.6
1,273,055	+		SO1225	0.58	+0.4
1,273,063	-		SO1225	0.58	-0.4
1,273,241	+		SO1225	0.66	+1.1
1,273,241	+		SO1225	0.66	-1.6
1,273,254	-		SO1225	0.66	+1.3
1,273,302	-		SO1225	0.69	+0.2
1,273,506	-		SO1225	0.77	-0.8
1,273,537	+		SO1225	0.78	-0.2
1,273,663	-		SO1225	0.84	-0.2
1,273,750	+		SO1225	0.87	+0.1
1,273,839	+				-1.4
1,273,859	-				+1.7
1,273,861	+				-0.6
1,273,869	-				-0.6
1,273,869	-				-0.3
1,273,869	-				+1.8
1,273,869	-				+0.6
1,273,879	+				+0.1
1,273,970	-				+1.1
1,274,015	-				+0.2
1,274,024	-				+1.2
1,274,143	+				-0.2
1,274,143	+				+0.4
1,274,165	+				-0.2
1,274,217	+				+0.3
1,274,225	-				-1.4
1,274,225	-				-0.7
1,274,272	+				+0.6
1,274,272	+				+0.1
1,274,280	-				+1.2
1,274,364	+	radA	SO1226	0.11	+0.4
1,274,386	+	radA	SO1226	0.13	+1.0
1,274,443	+	radA	SO1226	0.17	+1.8
1,274,551	-	radA	SO1226	0.25	+0.5
1,274,642	+	radA	SO1226	0.32	-0.9
1,274,680	-	radA	SO1226	0.35	-0.1
1,274,805	+	radA	SO1226	0.44	+0.2
1,274,842	-	radA	SO1226	0.46	+1.4
1,275,026	+	radA	SO1226	0.60	-0.7
1,275,026	+	radA	SO1226	0.60	+1.5
1,275,026	+	radA	SO1226	0.60	-0.4
1,275,026	+	radA	SO1226	0.60	-1.4
1,275,034	-	radA	SO1226	0.60	-0.1
1,275,034	-	radA	SO1226	0.60	+0.4
1,275,034	-	radA	SO1226	0.60	-1.7
1,275,034	-	radA	SO1226	0.60	+1.0
1,275,047	-	radA	SO1226	0.61	-1.6