Strain Fitness in Shewanella oneidensis MR-1 around SO1193

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,235,040	-				+3.3
1,235,244	+		SO1192	0.14	-1.3
1,235,246	+		SO1192	0.15	+0.5
1,235,338	+		SO1192	0.32	-0.9
1,235,392	+		SO1192	0.42	+0.8
1,235,438	-		SO1192	0.51	-0.1
1,235,473	+		SO1192	0.58	-0.9
1,235,500	+		SO1192	0.63	+0.7
1,235,517	+		SO1192	0.66	+2.0
1,235,539	-		SO1192	0.70	+1.0
1,235,691	+				-0.5
1,235,691	+				-0.6
1,235,699	-				+1.7
1,235,699	-				+0.4
1,235,871	+				-1.1
1,235,898	-				-0.2
1,235,948	-				-0.3
1,236,070	-				-0.1
1,236,073	+				-2.8
1,236,126	-				-1.9
1,236,163	-				+1.2
1,236,181	+	secD-1	SO1193	0.10	-0.2
1,236,188	+	secD-1	SO1193	0.11	-1.1
1,236,280	+	secD-1	SO1193	0.16	-0.7
1,236,287	+	secD-1	SO1193	0.16	-1.1
1,236,311	+	secD-1	SO1193	0.17	+0.9
1,236,336	+	secD-1	SO1193	0.19	-0.3
1,236,453	+	secD-1	SO1193	0.25	-0.7
1,236,459	+	secD-1	SO1193	0.25	-0.8
1,236,462	-	secD-1	SO1193	0.25	-0.1
1,236,468	-	secD-1	SO1193	0.26	-0.2
1,236,537	-	secD-1	SO1193	0.29	-3.2
1,236,576	+	secD-1	SO1193	0.31	-0.6
1,236,576	+	secD-1	SO1193	0.31	+0.0
1,236,584	-	secD-1	SO1193	0.32	-0.7
1,236,636	+	secD-1	SO1193	0.35	+0.0
1,236,761	-	secD-1	SO1193	0.41	-2.3
1,236,795	+				-0.2
1,236,898	+	secD-1	SO1193	0.49	+2.8
1,236,918	-	secD-1	SO1193	0.50	-1.1
1,236,986	-	secD-1	SO1193	0.54	+0.2
1,237,157	-	secD-1	SO1193	0.63	+3.3
1,237,157	-	secD-1	SO1193	0.63	+1.2
1,237,325	+	secD-1	SO1193	0.72	+0.3
1,237,380	-	secD-1	SO1193	0.75	-1.9
1,237,381	-	secD-1	SO1193	0.75	+0.0
1,237,385	+	secD-1	SO1193	0.75	-1.0
1,237,385	+	secD-1	SO1193	0.75	-0.8
1,237,393	-	secD-1	SO1193	0.75	+1.8
1,237,393	-	secD-1	SO1193	0.75	-0.0
1,237,393	-	secD-1	SO1193	0.75	+1.1
1,237,398	+	secD-1	SO1193	0.76	-0.3
1,237,501	+	secD-1	SO1193	0.81	-0.4
1,237,501	+	secD-1	SO1193	0.81	+1.2
1,237,504	-	secD-1	SO1193	0.81	+1.8
1,237,509	-	secD-1	SO1193	0.82	+0.0
1,237,509	-	secD-1	SO1193	0.82	-1.7
1,237,533	-	secD-1	SO1193	0.83	+0.5
1,237,539	-	secD-1	SO1193	0.83	-1.0
1,237,564	-	secD-1	SO1193	0.85	-3.1
1,237,610	+	secD-1	SO1193	0.87	-0.7
1,237,633	+	secD-1	SO1193	0.88	-1.3
1,237,735	+				-0.7
1,237,755	-				-0.6
1,237,755	-				+0.7
1,237,849	-				-2.1
1,237,858	+				+0.5
1,237,858	+				-0.8
1,237,906	+				-1.3
1,238,143	+	secF-1	SO1194	0.33	+0.1
1,238,151	-	secF-1	SO1194	0.34	+0.7
1,238,151	-	secF-1	SO1194	0.34	-0.0
1,238,199	-	secF-1	SO1194	0.39	-1.3
1,238,227	+	secF-1	SO1194	0.42	+2.0
1,238,237	-	secF-1	SO1194	0.44	-0.8
1,238,245	-	secF-1	SO1194	0.45	+0.4
1,238,402	-	secF-1	SO1194	0.62	-0.9
1,238,550	+	secF-1	SO1194	0.79	-0.3
1,238,603	-	secF-1	SO1194	0.85	-0.9
1,238,611	-	secF-1	SO1194	0.86	+1.2