Strain Fitness in Shewanella oneidensis MR-1 around SO1189

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,231,812	+				+0.5
1,231,818	-				+1.4
1,232,123	+				-0.4
1,232,256	-				-0.4
1,232,286	+				+0.5
1,232,348	+		SO1188	0.20	+0.8
1,232,429	+		SO1188	0.35	+1.4
1,232,511	+		SO1188	0.51	+1.2
1,232,511	+		SO1188	0.51	-0.5
1,232,511	+		SO1188	0.51	+0.1
1,232,616	-		SO1188	0.70	+0.2
1,232,617	-		SO1188	0.71	+0.6
1,232,723	+				-1.5
1,232,731	-				-0.2
1,232,836	+				-0.2
1,232,871	+		SO1189	0.16	-1.4
1,232,962	+		SO1189	0.34	+1.0
1,233,023	+		SO1189	0.46	+1.5
1,233,042	+		SO1189	0.49	-0.7
1,233,050	-		SO1189	0.51	+1.8
1,233,132	+		SO1189	0.67	+0.0
1,233,132	+		SO1189	0.67	-1.3
1,233,132	+		SO1189	0.67	+2.1
1,233,154	-		SO1189	0.71	+1.6
1,233,154	-		SO1189	0.71	-2.3
1,233,187	-		SO1189	0.78	+0.4
1,233,303	+				-0.9
1,233,311	-				-0.2
1,233,311	-				-0.4
1,233,779	+		SO1190	0.55	+0.5
1,233,932	+		SO1190	0.73	+0.7
1,234,062	+		SO1190	0.89	+0.1
1,234,062	+		SO1190	0.89	-0.7
1,234,070	-				+0.4
1,234,070	-				-0.7
1,234,070	-				+2.8
1,234,134	+				+0.3
1,234,139	+				+0.2
1,234,139	+				+0.5