Strain Fitness in Shewanella oneidensis MR-1 around SO1146

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,189,227	+	mgtE-1	SO1145	0.37	-2.8
1,189,413	-	mgtE-1	SO1145	0.51	-0.9
1,189,420	-	mgtE-1	SO1145	0.51	-3.6
1,189,522	+	mgtE-1	SO1145	0.59	-1.8
1,189,525	-	mgtE-1	SO1145	0.59	-3.6
1,189,562	+	mgtE-1	SO1145	0.62	-3.3
1,189,565	-	mgtE-1	SO1145	0.62	+0.4
1,189,635	+	mgtE-1	SO1145	0.67	-2.5
1,189,645	+	mgtE-1	SO1145	0.68	-2.7
1,189,646	+	mgtE-1	SO1145	0.68	-2.2
1,189,653	-	mgtE-1	SO1145	0.68	-1.6
1,189,693	-	mgtE-1	SO1145	0.71	-3.8
1,189,724	-	mgtE-1	SO1145	0.73	-2.4
1,189,769	-	mgtE-1	SO1145	0.77	-2.7
1,189,771	+	mgtE-1	SO1145	0.77	-1.9
1,189,779	-	mgtE-1	SO1145	0.77	-3.4
1,189,780	-	mgtE-1	SO1145	0.77	-2.8
1,189,783	-	mgtE-1	SO1145	0.78	-3.1
1,189,841	+	mgtE-1	SO1145	0.82	-0.2
1,189,942	+	mgtE-1	SO1145	0.89	-2.5
1,189,950	-	mgtE-1	SO1145	0.90	-3.2
1,189,952	+				-0.4
1,189,952	+				-2.3
1,189,958	-				+0.4
1,190,013	+				-2.2
1,190,013	+				-1.9
1,190,013	+				-3.3
1,190,078	+				-1.6
1,190,142	+				-2.0
1,190,144	+				-2.3
1,190,226	+		SO1146	0.17	-2.5
1,190,234	-		SO1146	0.18	-2.4
1,190,269	+		SO1146	0.23	-2.2
1,190,335	+		SO1146	0.33	-3.4
1,190,343	-		SO1146	0.34	-3.7
1,190,422	+		SO1146	0.46	-4.1
1,190,430	-		SO1146	0.47	-2.2
1,190,593	-		SO1146	0.71	-2.0
1,190,626	-		SO1146	0.75	-2.6
1,190,643	-		SO1146	0.78	-3.9
1,190,950	+				-2.7
1,190,985	-				-2.5
1,190,985	-				-2.8
1,190,985	-				-2.3
1,191,015	+				-3.6
1,191,023	-				-2.0
1,191,041	+				-3.5
1,191,113	+				-1.7
1,191,113	+				-0.6
1,191,159	+				-0.1
1,191,241	+				-1.5
1,191,251	+				-1.2
1,191,296	+				+1.2
1,191,296	+				-1.5
1,191,296	+				+0.7
1,191,296	+				-0.9
1,191,296	+				+0.9
1,191,296	+				+0.2
1,191,296	+				-0.2
1,191,304	-				-1.3
1,191,304	-				-2.0
1,191,304	-				-1.2
1,191,304	-				+0.3
1,191,304	-				-0.2
1,191,304	-				+1.6
1,191,388	+				+0.1
1,191,396	-				-2.0
1,191,503	+				-1.6
1,191,504	+				-0.5
1,191,512	-				-2.4
1,191,513	-				-0.7
1,191,576	-		SO1148	0.15	-0.7
1,191,621	+		SO1148	0.19	-0.6
1,191,623	+		SO1148	0.19	-1.8
1,191,623	+		SO1148	0.19	+0.9
1,191,623	+		SO1148	0.19	+1.0
1,191,631	-		SO1148	0.20	-2.3
1,191,631	-		SO1148	0.20	-1.6
1,191,631	-		SO1148	0.20	+1.4
1,191,631	-		SO1148	0.20	-0.2
1,191,636	-		SO1148	0.20	-0.8
1,191,636	-		SO1148	0.20	-0.6
1,191,636	-		SO1148	0.20	-0.7