Strain Fitness in Shewanella oneidensis MR-1 around SO1036

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,074,581	-	cobT	SO1035	0.16	-0.6
1,074,744	-	cobT	SO1035	0.31	+0.8
1,074,759	+	cobT	SO1035	0.32	-1.6
1,074,774	-	cobT	SO1035	0.34	+0.5
1,075,054	+	cobT	SO1035	0.60	+0.9
1,075,159	+	cobT	SO1035	0.70	+1.7
1,075,167	-	cobT	SO1035	0.71	+0.7
1,075,257	-	cobT	SO1035	0.80	-1.8
1,075,328	+	cobT	SO1035	0.87	-0.3
1,075,362	+	cobT	SO1035	0.90	-0.7
1,075,459	-				-1.1
1,075,461	+				-0.8
1,075,464	+				-1.5
1,075,469	-				-4.2
1,075,694	-	cobS	SO1036	0.15	-3.2
1,075,742	-	cobS	SO1036	0.21	-1.7
1,075,849	+	cobS	SO1036	0.35	-2.0
1,075,884	-	cobS	SO1036	0.39	-1.2
1,075,885	+	cobS	SO1036	0.39	-1.9
1,076,038	+	cobS	SO1036	0.59	-2.2
1,076,071	-	cobS	SO1036	0.63	+0.0
1,076,086	-	cobS	SO1036	0.65	-1.0
1,076,168	+	cobS	SO1036	0.75	-1.4
1,076,230	+	cobS	SO1036	0.83	-1.3
1,076,248	-	cobS	SO1036	0.85	-1.6
1,076,330	+				-0.4
1,076,373	+				-0.7
1,076,463	-	cobU	SO1037	0.17	-1.2
1,076,626	+	cobU	SO1037	0.44	+0.5
1,076,626	+	cobU	SO1037	0.44	-0.4
1,076,626	+	cobU	SO1037	0.44	+1.1
1,076,634	-	cobU	SO1037	0.45	-0.7
1,076,754	-	cobU	SO1037	0.65	+0.0
1,076,826	+	cobU	SO1037	0.77	+0.9
1,076,898	+	cobU	SO1037	0.89	+1.0
1,076,921	+				-0.1
1,076,961	+				-0.0
1,077,070	+				+0.3
1,077,115	-				-2.1
1,077,142	-				+0.2
1,077,194	+				+0.5
1,077,194	+				+0.2
1,077,194	+				+1.5
1,077,194	+				+0.8
1,077,194	-				-0.4
1,077,202	-				-0.2
1,077,202	-				-0.2
1,077,302	-				+1.1
1,077,318	-				+1.5