Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fic and SO0914 are separated by 56 nucleotides SO0914 and SO0915 are separated by 152 nucleotides
SO0913: fic - cell filamentation protein Fic (NCBI ptt file), at 939,757 to 940,350
fic
SO0914: SO0914 - conserved hypothetical protein (NCBI ptt file), at 940,407 to 941,603
SO0914
SO0915: SO0915 - ankyrin domain protein (NCBI ptt file), at 941,756 to 944,206
SO0915
Position (kb) 940
941
942 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 939.443 kb on - strand at 939.549 kb on + strand at 939.650 kb on - strand at 939.681 kb on - strand at 939.740 kb on - strand at 939.740 kb on - strand at 939.741 kb on - strand at 939.848 kb on + strand, within fic at 939.848 kb on + strand, within fic at 939.848 kb on + strand, within fic at 939.860 kb on - strand, within fic at 939.887 kb on + strand, within fic at 939.887 kb on + strand, within fic at 939.887 kb on + strand, within fic at 939.913 kb on - strand, within fic at 939.914 kb on + strand, within fic at 939.922 kb on - strand, within fic at 939.930 kb on - strand, within fic at 939.946 kb on + strand, within fic at 939.954 kb on - strand, within fic at 939.956 kb on + strand, within fic at 939.964 kb on - strand, within fic at 940.002 kb on + strand, within fic at 940.003 kb on + strand, within fic at 940.017 kb on + strand, within fic at 940.019 kb on - strand, within fic at 940.020 kb on - strand, within fic at 940.023 kb on + strand, within fic at 940.037 kb on - strand, within fic at 940.046 kb on + strand, within fic at 940.046 kb on + strand, within fic at 940.046 kb on + strand, within fic at 940.054 kb on - strand, within fic at 940.055 kb on - strand, within fic at 940.057 kb on + strand, within fic at 940.062 kb on + strand, within fic at 940.070 kb on + strand, within fic at 940.125 kb on - strand, within fic at 940.149 kb on + strand, within fic at 940.149 kb on + strand, within fic at 940.157 kb on - strand, within fic at 940.157 kb on - strand, within fic at 940.157 kb on - strand, within fic at 940.177 kb on + strand, within fic at 940.185 kb on - strand, within fic at 940.215 kb on + strand, within fic at 940.215 kb on + strand, within fic at 940.215 kb on + strand, within fic at 940.223 kb on - strand, within fic at 940.281 kb on + strand, within fic at 940.303 kb on + strand at 940.303 kb on + strand at 940.318 kb on - strand at 940.424 kb on - strand at 940.466 kb on - strand at 940.489 kb on - strand at 940.551 kb on - strand, within SO0914 at 940.577 kb on + strand, within SO0914 at 940.585 kb on - strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.633 kb on + strand, within SO0914 at 940.641 kb on - strand, within SO0914 at 940.641 kb on - strand, within SO0914 at 940.641 kb on - strand, within SO0914 at 940.642 kb on + strand, within SO0914 at 940.652 kb on + strand, within SO0914 at 940.652 kb on + strand at 940.652 kb on + strand, within SO0914 at 940.660 kb on - strand, within SO0914 at 940.660 kb on - strand, within SO0914 at 940.906 kb on + strand, within SO0914 at 940.907 kb on + strand, within SO0914 at 940.930 kb on + strand, within SO0914 at 940.963 kb on - strand, within SO0914 at 940.977 kb on - strand, within SO0914 at 941.054 kb on - strand, within SO0914 at 941.107 kb on + strand, within SO0914 at 941.108 kb on - strand, within SO0914 at 941.148 kb on - strand, within SO0914 at 941.366 kb on - strand, within SO0914 at 941.371 kb on + strand, within SO0914 at 941.371 kb on + strand, within SO0914 at 941.371 kb on + strand, within SO0914 at 941.379 kb on - strand, within SO0914 at 941.414 kb on + strand, within SO0914 at 941.538 kb on - strand at 941.606 kb on - strand at 941.800 kb on + strand at 941.856 kb on + strand at 942.089 kb on - strand, within SO0915 at 942.274 kb on - strand, within SO0915 at 942.345 kb on - strand, within SO0915 at 942.415 kb on - strand, within SO0915 at 942.437 kb on - strand, within SO0915 at 942.439 kb on + strand, within SO0915 at 942.469 kb on + strand, within SO0915 at 942.541 kb on + strand, within SO0915 at 942.549 kb on - strand, within SO0915 at 942.599 kb on + strand, within SO0915
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 939,443 - +0.6 939,549 + -1.8 939,650 - +3.0 939,681 - -0.6 939,740 - +1.7 939,740 - +1.2 939,741 - -0.7 939,848 + fic SO0913 0.15 +1.4 939,848 + fic SO0913 0.15 -0.9 939,848 + fic SO0913 0.15 -0.7 939,860 - fic SO0913 0.17 +0.3 939,887 + fic SO0913 0.22 -0.4 939,887 + fic SO0913 0.22 +0.0 939,887 + fic SO0913 0.22 -1.5 939,913 - fic SO0913 0.26 -1.0 939,914 + fic SO0913 0.26 +0.3 939,922 - fic SO0913 0.28 +0.1 939,930 - fic SO0913 0.29 -0.0 939,946 + fic SO0913 0.32 +0.6 939,954 - fic SO0913 0.33 -0.1 939,956 + fic SO0913 0.34 -0.4 939,964 - fic SO0913 0.35 -0.1 940,002 + fic SO0913 0.41 -0.8 940,003 + fic SO0913 0.41 +1.5 940,017 + fic SO0913 0.44 -2.1 940,019 - fic SO0913 0.44 +1.2 940,020 - fic SO0913 0.44 -0.8 940,023 + fic SO0913 0.45 +1.2 940,037 - fic SO0913 0.47 -0.7 940,046 + fic SO0913 0.49 -0.2 940,046 + fic SO0913 0.49 +0.4 940,046 + fic SO0913 0.49 +0.3 940,054 - fic SO0913 0.50 -2.2 940,055 - fic SO0913 0.50 -0.8 940,057 + fic SO0913 0.51 -2.3 940,062 + fic SO0913 0.51 +0.2 940,070 + fic SO0913 0.53 -1.8 940,125 - fic SO0913 0.62 -0.2 940,149 + fic SO0913 0.66 -1.3 940,149 + fic SO0913 0.66 -1.1 940,157 - fic SO0913 0.67 +1.5 940,157 - fic SO0913 0.67 +0.1 940,157 - fic SO0913 0.67 -0.1 940,177 + fic SO0913 0.71 +0.4 940,185 - fic SO0913 0.72 -1.4 940,215 + fic SO0913 0.77 +0.9 940,215 + fic SO0913 0.77 +1.4 940,215 + fic SO0913 0.77 -0.7 940,223 - fic SO0913 0.78 -1.7 940,281 + fic SO0913 0.88 -0.2 940,303 + -1.0 940,303 + +0.7 940,318 - -1.6 940,424 - +1.2 940,466 - +1.1 940,489 - -1.5 940,551 - SO0914 0.12 +0.1 940,577 + SO0914 0.14 +0.2 940,585 - SO0914 0.15 +0.1 940,633 + SO0914 0.19 -2.2 940,633 + SO0914 0.19 -0.9 940,633 + SO0914 0.19 -0.9 940,633 + SO0914 0.19 -2.6 940,633 + SO0914 0.19 +0.8 940,633 + SO0914 0.19 -1.0 940,641 - SO0914 0.20 -1.2 940,641 - SO0914 0.20 +0.3 940,641 - SO0914 0.20 +1.2 940,642 + SO0914 0.20 +1.6 940,652 + SO0914 0.20 -0.2 940,652 + -0.6 940,652 + SO0914 0.20 +0.9 940,660 - SO0914 0.21 +0.3 940,660 - SO0914 0.21 -0.3 940,906 + SO0914 0.42 -1.9 940,907 + SO0914 0.42 -0.7 940,930 + SO0914 0.44 -0.9 940,963 - SO0914 0.46 -1.3 940,977 - SO0914 0.48 -0.1 941,054 - SO0914 0.54 -0.6 941,107 + SO0914 0.58 -0.7 941,108 - SO0914 0.59 +1.8 941,148 - SO0914 0.62 -0.4 941,366 - SO0914 0.80 -0.8 941,371 + SO0914 0.81 -1.0 941,371 + SO0914 0.81 -0.8 941,371 + SO0914 0.81 +0.1 941,379 - SO0914 0.81 -0.7 941,414 + SO0914 0.84 +0.1 941,538 - +0.0 941,606 - -0.2 941,800 + -1.6 941,856 + -1.8 942,089 - SO0915 0.14 +0.4 942,274 - SO0915 0.21 -0.5 942,345 - SO0915 0.24 -1.4 942,415 - SO0915 0.27 -0.9 942,437 - SO0915 0.28 +0.6 942,439 + SO0915 0.28 +0.8 942,469 + SO0915 0.29 +0.9 942,541 + SO0915 0.32 +0.5 942,549 - SO0915 0.32 +1.4 942,599 + SO0915 0.34 +0.3
Or see this region's nucleotide sequence