Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsbD and cutA overlap by 4 nucleotides cutA and fsxA are separated by 222 nucleotides fsxA and SO0699 are separated by 166 nucleotides SO0699 and SO0700 are separated by 43 nucleotides SO0700 and SO0701 are separated by 235 nucleotides
SO0696: dsbD - thiol:disulfide interchange protein DsbD (NCBI ptt file), at 714,174 to 716,006
dsbD
SO0697: cutA - periplasmic divalent cation tolerance protein CutA (NCBI ptt file), at 716,003 to 716,326
cutA
SO0698: fsxA - fxsA protein (NCBI ptt file), at 716,549 to 717,112
fsxA
SO0699: SO0699 - hypothetical protein (NCBI ptt file), at 717,279 to 717,647
SO0699
SO0700: SO0700 - hypothetical protein (NCBI ptt file), at 717,691 to 717,855
SO0700
SO0701: SO0701 - transcriptional regulator, LysR family (NCBI ptt file), at 718,091 to 719,080
SO0701
Position (kb) 716
717
718 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 715.630 kb on - strand, within dsbD at 715.630 kb on - strand, within dsbD at 715.634 kb on + strand, within dsbD at 715.642 kb on - strand, within dsbD at 715.642 kb on - strand, within dsbD at 715.766 kb on - strand, within dsbD at 715.884 kb on - strand at 715.982 kb on + strand at 715.990 kb on - strand at 716.008 kb on + strand at 716.013 kb on + strand at 716.037 kb on - strand, within cutA at 716.039 kb on + strand, within cutA at 716.122 kb on - strand, within cutA at 716.127 kb on - strand, within cutA at 716.273 kb on + strand, within cutA at 716.326 kb on - strand at 716.326 kb on - strand at 716.328 kb on + strand at 716.331 kb on - strand at 716.467 kb on - strand at 716.603 kb on + strand at 716.643 kb on + strand, within fsxA at 716.643 kb on + strand, within fsxA at 716.643 kb on + strand, within fsxA at 716.650 kb on - strand, within fsxA at 716.662 kb on - strand, within fsxA at 716.662 kb on - strand, within fsxA at 716.669 kb on + strand, within fsxA at 716.687 kb on - strand, within fsxA at 716.779 kb on - strand, within fsxA at 716.935 kb on + strand, within fsxA at 716.939 kb on + strand, within fsxA at 716.947 kb on - strand, within fsxA at 716.981 kb on - strand, within fsxA at 716.998 kb on + strand, within fsxA at 717.011 kb on - strand, within fsxA at 717.014 kb on - strand, within fsxA at 717.020 kb on + strand, within fsxA at 717.099 kb on + strand at 717.100 kb on + strand at 717.107 kb on - strand at 717.127 kb on + strand at 717.188 kb on + strand at 717.309 kb on + strand at 717.331 kb on + strand, within SO0699 at 717.461 kb on + strand, within SO0699 at 717.461 kb on + strand, within SO0699 at 717.469 kb on - strand, within SO0699 at 717.469 kb on - strand, within SO0699 at 717.486 kb on + strand, within SO0699 at 717.541 kb on + strand, within SO0699 at 717.573 kb on + strand, within SO0699 at 717.625 kb on - strand at 717.667 kb on - strand at 717.749 kb on + strand, within SO0700 at 717.794 kb on + strand, within SO0700 at 717.850 kb on + strand at 717.963 kb on + strand at 717.963 kb on + strand at 717.971 kb on - strand at 718.010 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 715,630 - dsbD SO0696 0.79 -0.6 715,630 - dsbD SO0696 0.79 -0.9 715,634 + dsbD SO0696 0.80 -2.2 715,642 - dsbD SO0696 0.80 -3.1 715,642 - dsbD SO0696 0.80 -0.9 715,766 - dsbD SO0696 0.87 -1.4 715,884 - +0.3 715,982 + -0.9 715,990 - -1.1 716,008 + +0.0 716,013 + -1.1 716,037 - cutA SO0697 0.10 -1.1 716,039 + cutA SO0697 0.11 +0.4 716,122 - cutA SO0697 0.37 +0.7 716,127 - cutA SO0697 0.38 -1.1 716,273 + cutA SO0697 0.83 -0.2 716,326 - -0.2 716,326 - +0.6 716,328 + -1.7 716,331 - -0.1 716,467 - +0.0 716,603 + +0.1 716,643 + fsxA SO0698 0.17 -0.3 716,643 + fsxA SO0698 0.17 +0.0 716,643 + fsxA SO0698 0.17 -0.8 716,650 - fsxA SO0698 0.18 +0.0 716,662 - fsxA SO0698 0.20 -0.8 716,662 - fsxA SO0698 0.20 +1.8 716,669 + fsxA SO0698 0.21 +1.6 716,687 - fsxA SO0698 0.24 +0.8 716,779 - fsxA SO0698 0.41 +0.7 716,935 + fsxA SO0698 0.68 -0.0 716,939 + fsxA SO0698 0.69 +0.2 716,947 - fsxA SO0698 0.71 +0.2 716,981 - fsxA SO0698 0.77 +0.7 716,998 + fsxA SO0698 0.80 -2.1 717,011 - fsxA SO0698 0.82 +0.6 717,014 - fsxA SO0698 0.82 -0.6 717,020 + fsxA SO0698 0.84 +2.4 717,099 + +1.1 717,100 + -1.1 717,107 - -0.3 717,127 + -1.5 717,188 + +1.0 717,309 + +0.3 717,331 + SO0699 0.14 -1.8 717,461 + SO0699 0.49 -0.9 717,461 + SO0699 0.49 +0.2 717,469 - SO0699 0.51 +0.2 717,469 - SO0699 0.51 +0.6 717,486 + SO0699 0.56 -3.0 717,541 + SO0699 0.71 +0.3 717,573 + SO0699 0.80 -0.1 717,625 - -1.5 717,667 - +1.4 717,749 + SO0700 0.35 +0.3 717,794 + SO0700 0.62 +0.2 717,850 + -1.8 717,963 + -1.9 717,963 + +0.3 717,971 - -0.1 718,010 + +0.6
Or see this region's nucleotide sequence