Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0675 and SO0676 are separated by 70 nucleotides SO0676 and SO0677 are separated by 2 nucleotides SO0677 and SO0678 overlap by 1 nucleotides SO0678 and SO0679 are separated by 28 nucleotides
SO0675: SO0675 - prophage MuSo1, major head subunit, putative (NCBI ptt file), at 693,403 to 694,323
SO0675
SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840
SO0676
SO0677: SO0677 - conserved hypothetical protein (NCBI ptt file), at 694,843 to 695,283
SO0677
SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726
SO0678
SO0679: SO0679 - hypothetical protein (NCBI ptt file), at 695,755 to 696,501
SO0679
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 693.868 kb on - strand, within SO0675 at 693.889 kb on - strand, within SO0675 at 693.892 kb on + strand, within SO0675 at 693.901 kb on + strand, within SO0675 at 693.926 kb on - strand, within SO0675 at 693.995 kb on - strand, within SO0675 at 694.045 kb on - strand, within SO0675 at 694.050 kb on - strand, within SO0675 at 694.060 kb on + strand, within SO0675 at 694.089 kb on - strand, within SO0675 at 694.145 kb on - strand, within SO0675 at 694.194 kb on - strand, within SO0675 at 694.216 kb on - strand, within SO0675 at 694.238 kb on + strand at 694.246 kb on - strand at 694.270 kb on + strand at 694.270 kb on - strand at 694.287 kb on + strand at 694.317 kb on - strand at 694.347 kb on - strand at 694.456 kb on + strand, within SO0676 at 694.463 kb on + strand, within SO0676 at 694.464 kb on - strand, within SO0676 at 694.486 kb on - strand, within SO0676 at 694.492 kb on - strand, within SO0676 at 694.546 kb on + strand, within SO0676 at 694.546 kb on + strand, within SO0676 at 694.563 kb on + strand, within SO0676 at 694.563 kb on + strand, within SO0676 at 694.648 kb on + strand, within SO0676 at 694.738 kb on + strand, within SO0676 at 694.754 kb on + strand, within SO0676 at 694.785 kb on - strand, within SO0676 at 694.862 kb on - strand at 694.872 kb on - strand at 694.899 kb on + strand, within SO0677 at 694.899 kb on + strand, within SO0677 at 694.907 kb on - strand, within SO0677 at 694.907 kb on - strand, within SO0677 at 694.909 kb on - strand, within SO0677 at 694.921 kb on + strand, within SO0677 at 695.102 kb on + strand, within SO0677 at 695.102 kb on + strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.157 kb on + strand, within SO0677 at 695.157 kb on + strand, within SO0677 at 695.182 kb on - strand, within SO0677 at 695.182 kb on - strand, within SO0677 at 695.266 kb on + strand at 695.280 kb on - strand at 695.322 kb on + strand at 695.322 kb on + strand at 695.330 kb on - strand, within SO0678 at 695.330 kb on - strand, within SO0678 at 695.406 kb on - strand, within SO0678 at 695.406 kb on - strand, within SO0678 at 695.459 kb on + strand, within SO0678 at 695.499 kb on - strand, within SO0678 at 695.501 kb on + strand, within SO0678 at 695.509 kb on - strand, within SO0678 at 695.509 kb on - strand, within SO0678 at 695.514 kb on + strand, within SO0678 at 695.561 kb on - strand, within SO0678 at 695.591 kb on - strand, within SO0678 at 695.602 kb on - strand, within SO0678 at 695.636 kb on + strand, within SO0678 at 695.636 kb on + strand, within SO0678 at 695.644 kb on - strand, within SO0678 at 695.677 kb on + strand, within SO0678 at 695.678 kb on + strand, within SO0678 at 695.917 kb on + strand, within SO0679 at 695.924 kb on - strand, within SO0679 at 695.925 kb on - strand, within SO0679 at 696.035 kb on + strand, within SO0679 at 696.055 kb on + strand, within SO0679 at 696.063 kb on - strand, within SO0679 at 696.086 kb on - strand, within SO0679 at 696.113 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.179 kb on - strand, within SO0679 at 696.196 kb on - strand, within SO0679 at 696.216 kb on + strand, within SO0679 at 696.242 kb on + strand, within SO0679 at 696.255 kb on - strand, within SO0679 at 696.260 kb on - strand, within SO0679
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 693,868 - SO0675 0.50 +0.9 693,889 - SO0675 0.53 +0.9 693,892 + SO0675 0.53 +0.9 693,901 + SO0675 0.54 +1.0 693,926 - SO0675 0.57 -0.9 693,995 - SO0675 0.64 -0.8 694,045 - SO0675 0.70 -0.1 694,050 - SO0675 0.70 -0.0 694,060 + SO0675 0.71 -2.9 694,089 - SO0675 0.74 -2.5 694,145 - SO0675 0.81 -0.4 694,194 - SO0675 0.86 -1.2 694,216 - SO0675 0.88 +0.6 694,238 + -1.0 694,246 - +0.0 694,270 + +0.6 694,270 - -0.0 694,287 + -1.1 694,317 - +2.2 694,347 - -1.1 694,456 + SO0676 0.14 +1.4 694,463 + SO0676 0.15 +0.3 694,464 - SO0676 0.16 -0.7 694,486 - SO0676 0.21 +0.4 694,492 - SO0676 0.22 -3.4 694,546 + SO0676 0.34 -1.7 694,546 + SO0676 0.34 +1.4 694,563 + SO0676 0.38 +0.7 694,563 + SO0676 0.38 -0.6 694,648 + SO0676 0.57 +0.5 694,738 + SO0676 0.77 +0.8 694,754 + SO0676 0.81 -0.5 694,785 - SO0676 0.87 -0.5 694,862 - -0.0 694,872 - +0.8 694,899 + SO0677 0.13 -2.1 694,899 + SO0677 0.13 -0.7 694,907 - SO0677 0.15 +0.5 694,907 - SO0677 0.15 -2.1 694,909 - SO0677 0.15 -1.4 694,921 + SO0677 0.18 +0.3 695,102 + SO0677 0.59 +0.3 695,102 + SO0677 0.59 +0.1 695,110 - SO0677 0.61 -0.6 695,110 - SO0677 0.61 -1.2 695,110 - SO0677 0.61 -1.0 695,157 + SO0677 0.71 -0.1 695,157 + SO0677 0.71 +0.8 695,182 - SO0677 0.77 -0.5 695,182 - SO0677 0.77 +2.3 695,266 + -2.4 695,280 - +0.4 695,322 + -0.2 695,322 + +1.0 695,330 - SO0678 0.11 +0.5 695,330 - SO0678 0.11 -0.0 695,406 - SO0678 0.28 +1.3 695,406 - SO0678 0.28 -1.6 695,459 + SO0678 0.40 +1.3 695,499 - SO0678 0.49 -0.4 695,501 + SO0678 0.49 -0.3 695,509 - SO0678 0.51 -1.0 695,509 - SO0678 0.51 +0.7 695,514 + SO0678 0.52 -1.1 695,561 - SO0678 0.63 +0.4 695,591 - SO0678 0.69 -1.2 695,602 - SO0678 0.72 +0.8 695,636 + SO0678 0.80 -1.7 695,636 + SO0678 0.80 +0.6 695,644 - SO0678 0.81 +1.5 695,677 + SO0678 0.89 -0.3 695,678 + SO0678 0.89 -2.3 695,917 + SO0679 0.22 -1.4 695,924 - SO0679 0.23 -1.6 695,925 - SO0679 0.23 +0.6 696,035 + SO0679 0.37 -0.9 696,055 + SO0679 0.40 -0.5 696,063 - SO0679 0.41 -0.6 696,086 - SO0679 0.44 -0.6 696,113 + SO0679 0.48 -0.6 696,146 + SO0679 0.52 +0.2 696,146 + SO0679 0.52 +1.2 696,146 + SO0679 0.52 -1.4 696,146 + SO0679 0.52 +0.8 696,146 + SO0679 0.52 -0.7 696,146 + SO0679 0.52 -1.0 696,146 + SO0679 0.52 +1.5 696,146 + SO0679 0.52 -1.1 696,146 + SO0679 0.52 +0.1 696,146 + SO0679 0.52 -0.3 696,146 + SO0679 0.52 +1.0 696,154 - SO0679 0.53 -0.0 696,154 - SO0679 0.53 -1.2 696,154 - SO0679 0.53 -1.6 696,154 - SO0679 0.53 -2.1 696,154 - SO0679 0.53 +0.3 696,154 - SO0679 0.53 +0.7 696,154 - SO0679 0.53 +0.5 696,154 - SO0679 0.53 +0.8 696,154 - SO0679 0.53 -1.6 696,154 - SO0679 0.53 +1.4 696,154 - SO0679 0.53 +0.6 696,154 - SO0679 0.53 -1.6 696,154 - SO0679 0.53 +0.2 696,154 - SO0679 0.53 -0.7 696,154 - SO0679 0.53 -0.1 696,179 - SO0679 0.57 +0.3 696,196 - SO0679 0.59 +0.4 696,216 + SO0679 0.62 +0.7 696,242 + SO0679 0.65 +1.0 696,255 - SO0679 0.67 +1.0 696,260 - SO0679 0.68 -0.7
Or see this region's nucleotide sequence