Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0673 and SO0674 are separated by 76 nucleotides SO0674 and SO0675 overlap by 1 nucleotides SO0675 and SO0676 are separated by 70 nucleotides
SO0673: SO0673 - hypothetical protein (NCBI ptt file), at 690,904 to 692,157
SO0673
SO0674: SO0674 - prophage MuSo1, protein Gp32, putative (NCBI ptt file), at 692,234 to 693,403
SO0674
SO0675: SO0675 - prophage MuSo1, major head subunit, putative (NCBI ptt file), at 693,403 to 694,323
SO0675
SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840
SO0676
Position (kb) 692
693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 691.267 kb on - strand, within SO0673 at 691.277 kb on - strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.428 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.439 kb on + strand, within SO0673 at 691.440 kb on + strand, within SO0673 at 691.449 kb on + strand, within SO0673 at 691.456 kb on + strand, within SO0673 at 691.457 kb on - strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.496 kb on + strand, within SO0673 at 691.497 kb on + strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.504 kb on - strand, within SO0673 at 691.505 kb on - strand, within SO0673 at 691.528 kb on - strand, within SO0673 at 691.548 kb on + strand, within SO0673 at 691.548 kb on + strand, within SO0673 at 691.551 kb on - strand, within SO0673 at 691.556 kb on - strand, within SO0673 at 691.556 kb on - strand, within SO0673 at 691.561 kb on + strand, within SO0673 at 691.569 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.584 kb on + strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.592 kb on - strand, within SO0673 at 691.614 kb on - strand, within SO0673 at 691.620 kb on + strand, within SO0673 at 691.620 kb on + strand, within SO0673 at 691.630 kb on + strand, within SO0673 at 691.642 kb on - strand, within SO0673 at 691.642 kb on - strand, within SO0673 at 691.827 kb on + strand, within SO0673 at 691.827 kb on + strand, within SO0673 at 691.828 kb on + strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.835 kb on - strand, within SO0673 at 691.845 kb on - strand, within SO0673 at 691.860 kb on - strand, within SO0673 at 691.860 kb on - strand, within SO0673 at 691.934 kb on - strand, within SO0673 at 691.979 kb on - strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.022 kb on + strand, within SO0673 at 692.030 kb on - strand, within SO0673 at 692.030 kb on - strand, within SO0673 at 692.031 kb on - strand, within SO0673 at 692.033 kb on - strand at 692.064 kb on + strand at 692.065 kb on + strand at 692.072 kb on - strand at 692.079 kb on - strand at 692.106 kb on - strand at 692.135 kb on + strand at 692.135 kb on + strand at 692.142 kb on + strand at 692.158 kb on + strand at 692.159 kb on + strand at 692.167 kb on - strand at 692.181 kb on + strand at 692.181 kb on + strand at 692.185 kb on - strand at 692.187 kb on + strand at 692.189 kb on - strand at 692.189 kb on - strand at 692.191 kb on + strand at 692.204 kb on - strand at 692.209 kb on + strand at 692.217 kb on - strand at 692.217 kb on - strand at 692.232 kb on - strand at 692.242 kb on - strand at 692.257 kb on - strand at 692.287 kb on - strand at 692.289 kb on + strand at 692.318 kb on + strand at 692.318 kb on + strand at 692.326 kb on + strand at 692.340 kb on + strand at 692.350 kb on + strand at 692.479 kb on + strand, within SO0674 at 692.527 kb on + strand, within SO0674 at 692.535 kb on - strand, within SO0674 at 692.548 kb on + strand, within SO0674 at 692.574 kb on + strand, within SO0674 at 692.587 kb on - strand, within SO0674 at 692.621 kb on + strand, within SO0674 at 692.624 kb on + strand, within SO0674 at 692.629 kb on + strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.637 kb on - strand, within SO0674 at 692.689 kb on - strand, within SO0674 at 692.735 kb on - strand, within SO0674 at 692.740 kb on - strand, within SO0674 at 692.746 kb on - strand, within SO0674 at 692.804 kb on - strand, within SO0674 at 692.811 kb on - strand, within SO0674 at 692.827 kb on - strand, within SO0674 at 692.917 kb on + strand, within SO0674 at 692.917 kb on + strand, within SO0674 at 692.925 kb on - strand, within SO0674 at 692.925 kb on - strand, within SO0674 at 693.018 kb on + strand, within SO0674 at 693.108 kb on + strand, within SO0674 at 693.116 kb on - strand, within SO0674 at 693.142 kb on + strand, within SO0674 at 693.149 kb on + strand, within SO0674 at 693.259 kb on + strand, within SO0674 at 693.259 kb on + strand, within SO0674 at 693.259 kb on + strand, within SO0674 at 693.277 kb on - strand, within SO0674 at 693.277 kb on - strand, within SO0674 at 693.426 kb on + strand at 693.432 kb on - strand at 693.434 kb on - strand at 693.451 kb on - strand at 693.474 kb on + strand at 693.482 kb on - strand at 693.482 kb on - strand at 693.531 kb on + strand, within SO0675 at 693.539 kb on - strand, within SO0675 at 693.539 kb on - strand, within SO0675 at 693.546 kb on - strand, within SO0675 at 693.568 kb on + strand, within SO0675 at 693.602 kb on + strand, within SO0675 at 693.610 kb on + strand, within SO0675 at 693.610 kb on - strand, within SO0675 at 693.696 kb on + strand, within SO0675 at 693.696 kb on + strand, within SO0675 at 693.704 kb on - strand, within SO0675 at 693.709 kb on + strand, within SO0675 at 693.730 kb on + strand, within SO0675 at 693.738 kb on - strand, within SO0675 at 693.739 kb on - strand, within SO0675 at 693.789 kb on + strand, within SO0675 at 693.789 kb on + strand, within SO0675 at 693.797 kb on - strand, within SO0675 at 693.868 kb on - strand, within SO0675 at 693.889 kb on - strand, within SO0675 at 693.892 kb on + strand, within SO0675 at 693.901 kb on + strand, within SO0675 at 693.926 kb on - strand, within SO0675 at 693.995 kb on - strand, within SO0675 at 694.045 kb on - strand, within SO0675 at 694.050 kb on - strand, within SO0675 at 694.060 kb on + strand, within SO0675 at 694.089 kb on - strand, within SO0675 at 694.145 kb on - strand, within SO0675 at 694.194 kb on - strand, within SO0675 at 694.216 kb on - strand, within SO0675 at 694.238 kb on + strand at 694.246 kb on - strand at 694.270 kb on + strand at 694.270 kb on - strand at 694.287 kb on + strand at 694.317 kb on - strand at 694.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 691,267 - SO0673 0.29 -0.2 691,277 - SO0673 0.30 -1.5 691,428 + SO0673 0.42 -0.2 691,428 + SO0673 0.42 -0.2 691,428 + SO0673 0.42 +4.2 691,439 + SO0673 0.43 -2.1 691,439 + SO0673 0.43 -1.7 691,439 + SO0673 0.43 +1.0 691,439 + SO0673 0.43 +0.3 691,440 + SO0673 0.43 +0.1 691,449 + SO0673 0.43 -0.3 691,456 + SO0673 0.44 +0.0 691,457 - SO0673 0.44 -0.3 691,496 + SO0673 0.47 -1.2 691,496 + SO0673 0.47 +0.4 691,496 + SO0673 0.47 +0.6 691,496 + SO0673 0.47 -0.8 691,496 + SO0673 0.47 -0.6 691,496 + SO0673 0.47 +2.0 691,497 + SO0673 0.47 -1.2 691,504 - SO0673 0.48 -1.1 691,504 - SO0673 0.48 +1.4 691,504 - SO0673 0.48 -1.2 691,504 - SO0673 0.48 -0.2 691,504 - SO0673 0.48 +0.4 691,504 - SO0673 0.48 -1.5 691,504 - SO0673 0.48 +0.4 691,504 - SO0673 0.48 -0.2 691,504 - SO0673 0.48 +0.1 691,504 - SO0673 0.48 -1.0 691,505 - SO0673 0.48 +0.8 691,528 - SO0673 0.50 +0.6 691,548 + SO0673 0.51 -0.2 691,548 + SO0673 0.51 -0.2 691,551 - SO0673 0.52 -0.5 691,556 - SO0673 0.52 -0.2 691,556 - SO0673 0.52 +1.2 691,561 + SO0673 0.52 +0.8 691,569 + SO0673 0.53 -0.6 691,584 + SO0673 0.54 -0.0 691,584 + SO0673 0.54 -0.2 691,584 + SO0673 0.54 -1.2 691,584 + SO0673 0.54 -1.3 691,584 + SO0673 0.54 +0.3 691,584 + SO0673 0.54 +1.2 691,584 + SO0673 0.54 +1.3 691,584 + SO0673 0.54 -0.4 691,584 + SO0673 0.54 -1.2 691,584 + SO0673 0.54 -0.0 691,584 + SO0673 0.54 -0.1 691,592 - SO0673 0.55 -2.0 691,592 - SO0673 0.55 -1.4 691,592 - SO0673 0.55 +0.5 691,592 - SO0673 0.55 -0.9 691,592 - SO0673 0.55 -0.2 691,592 - SO0673 0.55 -1.0 691,592 - SO0673 0.55 -0.6 691,592 - SO0673 0.55 -0.1 691,592 - SO0673 0.55 +1.7 691,592 - SO0673 0.55 +3.9 691,614 - SO0673 0.57 -0.7 691,620 + SO0673 0.57 -2.0 691,620 + SO0673 0.57 -1.1 691,630 + SO0673 0.58 -1.2 691,642 - SO0673 0.59 -0.7 691,642 - SO0673 0.59 +2.5 691,827 + SO0673 0.74 -0.6 691,827 + SO0673 0.74 -0.7 691,828 + SO0673 0.74 +0.4 691,835 - SO0673 0.74 -2.5 691,835 - SO0673 0.74 -1.2 691,835 - SO0673 0.74 -1.6 691,845 - SO0673 0.75 -0.3 691,860 - SO0673 0.76 +1.0 691,860 - SO0673 0.76 +1.0 691,934 - SO0673 0.82 +0.0 691,979 - SO0673 0.86 -0.1 692,022 + SO0673 0.89 +2.3 692,022 + SO0673 0.89 -0.4 692,022 + SO0673 0.89 -0.9 692,030 - SO0673 0.90 +1.4 692,030 - SO0673 0.90 -1.0 692,031 - SO0673 0.90 +2.0 692,033 - +0.3 692,064 + +0.0 692,065 + -1.3 692,072 - -0.7 692,079 - +0.5 692,106 - +0.7 692,135 + -0.9 692,135 + +1.3 692,142 + +1.8 692,158 + -1.4 692,159 + +0.7 692,167 - +0.1 692,181 + -0.0 692,181 + -1.1 692,185 - +2.3 692,187 + -0.1 692,189 - -2.5 692,189 - +0.7 692,191 + -1.6 692,204 - +0.7 692,209 + +1.0 692,217 - -0.8 692,217 - -0.0 692,232 - +1.3 692,242 - +0.7 692,257 - -1.2 692,287 - -0.3 692,289 + +0.8 692,318 + -1.6 692,318 + -1.0 692,326 + -0.2 692,340 + +0.0 692,350 + +0.3 692,479 + SO0674 0.21 -0.7 692,527 + SO0674 0.25 +0.1 692,535 - SO0674 0.26 -1.2 692,548 + SO0674 0.27 +2.2 692,574 + SO0674 0.29 -0.8 692,587 - SO0674 0.30 -0.7 692,621 + SO0674 0.33 +2.3 692,624 + SO0674 0.33 +0.7 692,629 + SO0674 0.34 -0.9 692,637 - SO0674 0.34 -1.8 692,637 - SO0674 0.34 -1.5 692,637 - SO0674 0.34 -0.5 692,637 - SO0674 0.34 +0.1 692,689 - SO0674 0.39 +0.7 692,735 - SO0674 0.43 -1.4 692,740 - SO0674 0.43 +0.3 692,746 - SO0674 0.44 -0.4 692,804 - SO0674 0.49 -0.6 692,811 - SO0674 0.49 -1.5 692,827 - SO0674 0.51 -0.9 692,917 + SO0674 0.58 -0.7 692,917 + SO0674 0.58 -0.3 692,925 - SO0674 0.59 -0.9 692,925 - SO0674 0.59 +0.1 693,018 + SO0674 0.67 -1.1 693,108 + SO0674 0.75 -2.2 693,116 - SO0674 0.75 -0.3 693,142 + SO0674 0.78 -2.0 693,149 + SO0674 0.78 -0.7 693,259 + SO0674 0.88 -0.2 693,259 + SO0674 0.88 +0.1 693,259 + SO0674 0.88 -1.9 693,277 - SO0674 0.89 +1.1 693,277 - SO0674 0.89 -0.1 693,426 + -0.1 693,432 - -0.8 693,434 - -1.6 693,451 - -1.5 693,474 + +0.7 693,482 - +0.2 693,482 - +0.5 693,531 + SO0675 0.14 -0.1 693,539 - SO0675 0.15 -0.7 693,539 - SO0675 0.15 -1.4 693,546 - SO0675 0.16 +0.4 693,568 + SO0675 0.18 -0.8 693,602 + SO0675 0.22 +1.0 693,610 + SO0675 0.22 -0.2 693,610 - SO0675 0.22 -1.6 693,696 + SO0675 0.32 -0.6 693,696 + SO0675 0.32 -2.9 693,704 - SO0675 0.33 -1.3 693,709 + SO0675 0.33 -0.9 693,730 + SO0675 0.36 -0.8 693,738 - SO0675 0.36 -1.0 693,739 - SO0675 0.36 +0.5 693,789 + SO0675 0.42 +0.7 693,789 + SO0675 0.42 +1.5 693,797 - SO0675 0.43 +0.1 693,868 - SO0675 0.50 +0.9 693,889 - SO0675 0.53 +0.9 693,892 + SO0675 0.53 +0.9 693,901 + SO0675 0.54 +1.0 693,926 - SO0675 0.57 -0.9 693,995 - SO0675 0.64 -0.8 694,045 - SO0675 0.70 -0.1 694,050 - SO0675 0.70 -0.0 694,060 + SO0675 0.71 -2.9 694,089 - SO0675 0.74 -2.5 694,145 - SO0675 0.81 -0.4 694,194 - SO0675 0.86 -1.2 694,216 - SO0675 0.88 +0.6 694,238 + -1.0 694,246 - +0.0 694,270 + +0.6 694,270 - -0.0 694,287 + -1.1 694,317 - +2.2 694,347 - -1.1
Or see this region's nucleotide sequence