Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mrcB and ppiC-1 are separated by 77 nucleotides ppiC-1 and SO0636 are separated by 97 nucleotides SO0636 and SO0637 overlap by 4 nucleotides SO0637 and SO0638 are separated by 27 nucleotides SO0638 and SO0639 are separated by 188 nucleotides
SO0633: mrcB - penicillin-binding protein 1B (NCBI ptt file), at 660,661 to 662,967
mrcB
SO0635: ppiC-1 - peptidyl-prolyl cis-trans isomerase C (NCBI ptt file), at 663,045 to 663,323
ppiC-1
SO0636: SO0636 - acetyltransferase, GNAT family (NCBI ptt file), at 663,421 to 663,915
SO0636
SO0637: SO0637 - conserved hypothetical protein (NCBI ptt file), at 663,912 to 664,187
SO0637
SO0638: SO0638 - hypothetical protein (NCBI ptt file), at 664,215 to 664,415
SO0638
SO0639: SO0639 - Collagenase family (NCBI ptt file), at 664,604 to 667,717
SO0639
Position (kb) 663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 662.436 kb on + strand, within mrcB at 662.465 kb on - strand, within mrcB at 662.475 kb on + strand, within mrcB at 662.565 kb on - strand, within mrcB at 662.611 kb on - strand, within mrcB at 662.663 kb on + strand, within mrcB at 662.673 kb on + strand, within mrcB at 662.803 kb on - strand at 662.868 kb on + strand at 662.903 kb on + strand at 663.090 kb on - strand, within ppiC-1 at 663.200 kb on + strand, within ppiC-1 at 663.432 kb on - strand at 663.475 kb on + strand, within SO0636 at 663.485 kb on - strand, within SO0636 at 663.519 kb on - strand, within SO0636 at 663.588 kb on + strand, within SO0636 at 663.732 kb on + strand, within SO0636 at 663.930 kb on + strand at 664.114 kb on + strand, within SO0637 at 664.265 kb on + strand, within SO0638 at 664.293 kb on + strand, within SO0638 at 664.352 kb on + strand, within SO0638 at 664.393 kb on - strand, within SO0638 at 664.506 kb on + strand at 664.506 kb on + strand at 664.506 kb on + strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.624 kb on + strand at 664.630 kb on + strand at 664.633 kb on - strand at 664.645 kb on - strand at 664.705 kb on + strand at 664.768 kb on - strand at 664.779 kb on - strand at 664.794 kb on - strand at 664.876 kb on + strand at 664.878 kb on + strand at 664.897 kb on + strand at 664.897 kb on + strand at 664.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 662,436 + mrcB SO0633 0.77 -0.9 662,465 - mrcB SO0633 0.78 +0.8 662,475 + mrcB SO0633 0.79 -0.8 662,565 - mrcB SO0633 0.83 -0.0 662,611 - mrcB SO0633 0.85 +1.0 662,663 + mrcB SO0633 0.87 +1.7 662,673 + mrcB SO0633 0.87 +1.6 662,803 - +1.6 662,868 + +1.7 662,903 + +1.5 663,090 - ppiC-1 SO0635 0.16 +0.3 663,200 + ppiC-1 SO0635 0.56 -0.6 663,432 - -1.1 663,475 + SO0636 0.11 +3.6 663,485 - SO0636 0.13 -0.9 663,519 - SO0636 0.20 -3.2 663,588 + SO0636 0.34 -1.1 663,732 + SO0636 0.63 -1.7 663,930 + -1.5 664,114 + SO0637 0.73 +0.2 664,265 + SO0638 0.25 +0.3 664,293 + SO0638 0.39 +0.9 664,352 + SO0638 0.68 -1.6 664,393 - SO0638 0.89 -0.0 664,506 + -1.3 664,506 + +1.0 664,506 + -1.2 664,514 - +2.0 664,514 - +0.2 664,514 - -2.2 664,514 - -0.4 664,514 - +0.5 664,514 - +0.3 664,514 - +1.9 664,514 - -1.4 664,514 - -0.5 664,624 + -1.4 664,630 + +0.4 664,633 - +1.0 664,645 - +0.1 664,705 + -0.3 664,768 - -0.2 664,779 - +0.2 664,794 - +1.4 664,876 + +0.2 664,878 + +1.0 664,897 + -0.4 664,897 + -0.5 664,904 + -1.0
Or see this region's nucleotide sequence