Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0564 and SO0565 are separated by 10 nucleotides SO0565 and SO0566 are separated by 4 nucleotides SO0566 and plsC are separated by 182 nucleotides plsC and SO0568 are separated by 43 nucleotides
SO0564: SO0564 - conserved hypothetical protein (NCBI ptt file), at 585,522 to 586,511
SO0564
SO0565: SO0565 - adhesion protein, putative (NCBI ptt file), at 586,522 to 587,403
SO0565
SO0566: SO0566 - ABC 3 transport family protein (NCBI ptt file), at 587,408 to 588,187
SO0566
SO0567: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file), at 588,370 to 589,113
plsC
SO0568: SO0568 - conserved hypothetical protein (NCBI ptt file), at 589,157 to 589,561
SO0568
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 586.542 kb on - strand at 586.579 kb on + strand at 586.579 kb on + strand at 586.678 kb on + strand, within SO0565 at 586.686 kb on - strand, within SO0565 at 586.687 kb on + strand, within SO0565 at 586.847 kb on - strand, within SO0565 at 586.932 kb on + strand, within SO0565 at 586.953 kb on - strand, within SO0565 at 586.958 kb on - strand, within SO0565 at 586.983 kb on + strand, within SO0565 at 587.067 kb on - strand, within SO0565 at 587.104 kb on - strand, within SO0565 at 587.305 kb on + strand, within SO0565 at 587.330 kb on + strand at 587.364 kb on + strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.370 kb on - strand at 587.576 kb on + strand, within SO0566 at 587.797 kb on - strand, within SO0566 at 587.816 kb on + strand, within SO0566 at 587.822 kb on + strand, within SO0566 at 587.926 kb on - strand, within SO0566 at 588.005 kb on + strand, within SO0566 at 588.027 kb on - strand, within SO0566 at 588.141 kb on + strand at 588.154 kb on - strand at 588.165 kb on + strand at 588.165 kb on + strand at 588.173 kb on - strand at 588.176 kb on + strand at 588.394 kb on - strand at 588.394 kb on - strand at 588.472 kb on + strand, within plsC at 588.540 kb on + strand, within plsC at 588.612 kb on + strand, within plsC at 588.620 kb on - strand, within plsC at 588.620 kb on - strand, within plsC at 588.625 kb on + strand, within plsC at 588.679 kb on + strand, within plsC at 588.976 kb on - strand, within plsC
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 586,542 - -1.2 586,579 + -0.7 586,579 + -0.3 586,678 + SO0565 0.18 +0.1 586,686 - SO0565 0.19 +0.3 586,687 + SO0565 0.19 +0.1 586,847 - SO0565 0.37 +0.6 586,932 + SO0565 0.46 -1.9 586,953 - SO0565 0.49 -0.3 586,958 - SO0565 0.49 -0.9 586,983 + SO0565 0.52 -2.2 587,067 - SO0565 0.62 -1.0 587,104 - SO0565 0.66 -1.4 587,305 + SO0565 0.89 -0.0 587,330 + -0.4 587,364 + +0.5 587,370 - +0.6 587,370 - +0.2 587,370 - -0.2 587,370 - -0.3 587,576 + SO0566 0.22 -0.9 587,797 - SO0566 0.50 -0.9 587,816 + SO0566 0.52 +0.3 587,822 + SO0566 0.53 -0.9 587,926 - SO0566 0.66 +0.4 588,005 + SO0566 0.77 +0.9 588,027 - SO0566 0.79 -0.3 588,141 + +0.3 588,154 - -0.7 588,165 + +1.6 588,165 + +0.7 588,173 - -1.9 588,176 + -0.1 588,394 - +2.5 588,394 - -0.1 588,472 + plsC SO0567 0.14 +0.0 588,540 + plsC SO0567 0.23 +1.5 588,612 + plsC SO0567 0.33 +5.8 588,620 - plsC SO0567 0.34 -1.3 588,620 - plsC SO0567 0.34 +0.7 588,625 + plsC SO0567 0.34 -1.4 588,679 + plsC SO0567 0.42 +1.8 588,976 - plsC SO0567 0.81 +0.5
Or see this region's nucleotide sequence