Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gapA-1 and SO0539 are separated by 9 nucleotides SO0539 and SO0540 are separated by 106 nucleotides
SO0538: gapA-1 - glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file), at 557,305 to 558,318
gapA-1
SO0539: SO0539 - transporter, putative (NCBI ptt file), at 558,328 to 559,590
SO0539
SO0540: SO0540 - conserved hypothetical protein (NCBI ptt file), at 559,697 to 560,500
SO0540
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.358 kb on + strand at 557.477 kb on - strand, within gapA-1 at 557.477 kb on - strand, within gapA-1 at 557.543 kb on - strand, within gapA-1 at 557.574 kb on - strand, within gapA-1 at 557.695 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.915 kb on + strand, within gapA-1 at 557.923 kb on - strand, within gapA-1 at 557.971 kb on - strand, within gapA-1 at 557.982 kb on + strand, within gapA-1 at 557.990 kb on - strand, within gapA-1 at 558.012 kb on + strand, within gapA-1 at 558.110 kb on - strand, within gapA-1 at 558.215 kb on - strand, within gapA-1 at 558.352 kb on - strand at 558.436 kb on + strand at 558.601 kb on - strand, within SO0539 at 558.650 kb on - strand, within SO0539 at 558.675 kb on + strand, within SO0539 at 558.756 kb on + strand, within SO0539 at 558.784 kb on - strand, within SO0539 at 558.798 kb on + strand, within SO0539 at 558.826 kb on - strand, within SO0539 at 558.921 kb on + strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 559.115 kb on - strand, within SO0539 at 559.159 kb on + strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.230 kb on - strand, within SO0539 at 559.331 kb on + strand, within SO0539 at 559.331 kb on + strand, within SO0539 at 559.331 kb on + strand, within SO0539 at 559.339 kb on - strand, within SO0539 at 559.403 kb on + strand, within SO0539 at 559.418 kb on + strand, within SO0539 at 559.469 kb on + strand at 559.469 kb on + strand at 559.602 kb on - strand at 559.624 kb on - strand at 559.635 kb on - strand at 559.655 kb on + strand at 559.655 kb on + strand at 559.656 kb on + strand at 559.663 kb on - strand at 559.663 kb on - strand at 559.673 kb on + strand at 559.706 kb on + strand at 560.024 kb on + strand, within SO0540 at 560.112 kb on + strand, within SO0540 at 560.112 kb on + strand, within SO0540 at 560.119 kb on + strand, within SO0540 at 560.281 kb on - strand, within SO0540 at 560.372 kb on + strand, within SO0540 at 560.451 kb on - strand at 560.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 557,348 + -0.5 557,348 + -0.2 557,348 + -1.2 557,348 + -0.5 557,348 + -0.7 557,356 - +0.3 557,356 - +0.7 557,356 - -0.3 557,356 - -0.2 557,356 - +0.7 557,356 - +1.1 557,358 + +0.5 557,477 - gapA-1 SO0538 0.17 +0.8 557,477 - gapA-1 SO0538 0.17 -1.2 557,543 - gapA-1 SO0538 0.23 +0.1 557,574 - gapA-1 SO0538 0.27 +0.6 557,695 + gapA-1 SO0538 0.38 -0.7 557,884 + gapA-1 SO0538 0.57 +0.4 557,884 + gapA-1 SO0538 0.57 +2.3 557,884 + gapA-1 SO0538 0.57 -0.5 557,884 + gapA-1 SO0538 0.57 +0.1 557,884 + gapA-1 SO0538 0.57 -2.4 557,892 - gapA-1 SO0538 0.58 -0.8 557,892 - gapA-1 SO0538 0.58 -1.6 557,892 - gapA-1 SO0538 0.58 -1.6 557,915 + gapA-1 SO0538 0.60 +0.7 557,923 - gapA-1 SO0538 0.61 -0.8 557,971 - gapA-1 SO0538 0.66 +0.5 557,982 + gapA-1 SO0538 0.67 -0.1 557,990 - gapA-1 SO0538 0.68 +0.5 558,012 + gapA-1 SO0538 0.70 -0.8 558,110 - gapA-1 SO0538 0.79 +0.4 558,215 - gapA-1 SO0538 0.90 -0.5 558,352 - +1.5 558,436 + -0.2 558,601 - SO0539 0.22 +0.5 558,650 - SO0539 0.25 +0.5 558,675 + SO0539 0.27 +0.8 558,756 + SO0539 0.34 +1.1 558,784 - SO0539 0.36 -0.3 558,798 + SO0539 0.37 +3.5 558,826 - SO0539 0.39 +0.0 558,921 + SO0539 0.47 +0.8 558,934 - SO0539 0.48 +0.9 558,934 - SO0539 0.48 +0.6 558,934 - SO0539 0.48 -0.8 559,115 - SO0539 0.62 +0.2 559,159 + SO0539 0.66 +0.2 559,167 - SO0539 0.66 +0.3 559,167 - SO0539 0.66 -0.8 559,230 - SO0539 0.71 -2.4 559,331 + SO0539 0.79 +0.9 559,331 + SO0539 0.79 +0.6 559,331 + SO0539 0.79 +2.5 559,339 - SO0539 0.80 +0.7 559,403 + SO0539 0.85 -0.3 559,418 + SO0539 0.86 -1.8 559,469 + +0.3 559,469 + +0.5 559,602 - +0.2 559,624 - +0.5 559,635 - +0.9 559,655 + -0.8 559,655 + -0.2 559,656 + +0.8 559,663 - +0.9 559,663 - +0.1 559,673 + +1.1 559,706 + -1.5 560,024 + SO0540 0.41 +0.9 560,112 + SO0540 0.52 +0.8 560,112 + SO0540 0.52 -1.8 560,119 + SO0540 0.52 +1.6 560,281 - SO0540 0.73 -0.1 560,372 + SO0540 0.84 -0.8 560,451 - +1.2 560,453 + -0.1
Or see this region's nucleotide sequence