Strain Fitness in Shewanella oneidensis MR-1 around SO0519

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0518 and SO0519 are separated by 5 nucleotidesSO0519 and SO0520 are separated by 47 nucleotides SO0518: SO0518 - outer membrane efflux family protein, putative (NCBI ptt file), at 539,029 to 540,387 SO0518 SO0519: SO0519 - cation efflux protein, putative (NCBI ptt file), at 540,393 to 541,694 SO0519 SO0520: SO0520 - heavy metal efflux pump, CzcA family (NCBI ptt file), at 541,742 to 544,969 SO0520 Position (kb) 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 539.530 kb on + strand, within SO0518at 539.554 kb on - strand, within SO0518at 539.573 kb on + strand, within SO0518at 539.583 kb on + strand, within SO0518at 539.583 kb on + strand, within SO0518at 539.591 kb on - strand, within SO0518at 539.591 kb on - strand, within SO0518at 539.625 kb on - strand, within SO0518at 539.719 kb on - strand, within SO0518at 539.743 kb on - strand, within SO0518at 539.758 kb on - strand, within SO0518at 539.802 kb on - strand, within SO0518at 539.818 kb on + strand, within SO0518at 539.879 kb on - strand, within SO0518at 539.879 kb on - strand, within SO0518at 539.885 kb on - strand, within SO0518at 539.970 kb on - strand, within SO0518at 539.989 kb on + strand, within SO0518at 539.997 kb on - strand, within SO0518at 539.997 kb on - strand, within SO0518at 540.033 kb on + strand, within SO0518at 540.036 kb on - strand, within SO0518at 540.036 kb on - strand, within SO0518at 540.088 kb on + strand, within SO0518at 540.096 kb on - strand, within SO0518at 540.096 kb on - strand, within SO0518at 540.141 kb on - strand, within SO0518at 540.284 kb on + strandat 540.291 kb on - strandat 540.291 kb on - strandat 540.293 kb on + strandat 540.308 kb on + strandat 540.388 kb on + strandat 540.452 kb on + strandat 540.452 kb on + strandat 540.457 kb on - strandat 540.460 kb on - strandat 540.460 kb on - strandat 540.470 kb on - strandat 540.633 kb on + strand, within SO0519at 540.633 kb on + strand, within SO0519at 540.641 kb on + strand, within SO0519at 540.641 kb on - strand, within SO0519at 540.641 kb on - strand, within SO0519at 540.648 kb on - strand, within SO0519at 540.656 kb on + strand, within SO0519at 540.673 kb on - strand, within SO0519at 540.684 kb on + strand, within SO0519at 540.684 kb on + strand, within SO0519at 540.684 kb on + strand, within SO0519at 540.692 kb on - strand, within SO0519at 540.700 kb on + strand, within SO0519at 540.782 kb on - strand, within SO0519at 540.787 kb on + strand, within SO0519at 540.795 kb on - strand, within SO0519at 540.826 kb on + strand, within SO0519at 540.868 kb on + strand, within SO0519at 540.876 kb on - strand, within SO0519at 540.898 kb on - strand, within SO0519at 540.915 kb on + strand, within SO0519at 540.923 kb on - strand, within SO0519at 540.923 kb on - strand, within SO0519at 540.938 kb on - strand, within SO0519at 540.988 kb on - strand, within SO0519at 540.990 kb on + strand, within SO0519at 541.052 kb on - strand, within SO0519at 541.058 kb on + strand, within SO0519at 541.105 kb on - strand, within SO0519at 541.123 kb on - strand, within SO0519at 541.123 kb on - strand, within SO0519at 541.128 kb on - strand, within SO0519at 541.233 kb on - strand, within SO0519at 541.245 kb on + strand, within SO0519at 541.245 kb on + strand, within SO0519at 541.245 kb on + strand, within SO0519at 541.253 kb on - strand, within SO0519at 541.310 kb on - strand, within SO0519at 541.312 kb on + strand, within SO0519at 541.312 kb on + strand, within SO0519at 541.320 kb on - strand, within SO0519at 541.340 kb on - strand, within SO0519at 541.340 kb on - strand, within SO0519at 541.388 kb on + strand, within SO0519at 541.396 kb on - strand, within SO0519at 541.585 kb on + strandat 541.592 kb on + strandat 541.615 kb on + strandat 541.659 kb on - strandat 541.661 kb on + strandat 541.669 kb on - strandat 541.669 kb on - strandat 541.712 kb on - strandat 541.847 kb on + strandat 541.904 kb on + strandat 542.047 kb on + strandat 542.080 kb on + strand, within SO0520at 542.088 kb on - strand, within SO0520at 542.088 kb on - strand, within SO0520at 542.088 kb on - strand, within SO0520at 542.235 kb on - strand, within SO0520at 542.362 kb on + strand, within SO0520at 542.370 kb on - strand, within SO0520at 542.438 kb on + strand, within SO0520at 542.438 kb on - strand, within SO0520at 542.443 kb on + strand, within SO0520at 542.523 kb on - strand, within SO0520at 542.603 kb on - strand, within SO0520at 542.617 kb on - strand, within SO0520

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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539,530 + SO0518 0.37 +0.2
539,554 - SO0518 0.39 +2.1
539,573 + SO0518 0.40 -1.2
539,583 + SO0518 0.41 -0.6
539,583 + SO0518 0.41 +1.0
539,591 - SO0518 0.41 -1.1
539,591 - SO0518 0.41 -0.7
539,625 - SO0518 0.44 -1.1
539,719 - SO0518 0.51 +0.2
539,743 - SO0518 0.53 +1.2
539,758 - SO0518 0.54 -0.3
539,802 - SO0518 0.57 +1.8
539,818 + SO0518 0.58 +1.6
539,879 - SO0518 0.63 -0.9
539,879 - SO0518 0.63 -1.3
539,885 - SO0518 0.63 -2.4
539,970 - SO0518 0.69 +0.2
539,989 + SO0518 0.71 -2.0
539,997 - SO0518 0.71 +0.5
539,997 - SO0518 0.71 +0.7
540,033 + SO0518 0.74 -0.3
540,036 - SO0518 0.74 -0.8
540,036 - SO0518 0.74 -1.3
540,088 + SO0518 0.78 -0.4
540,096 - SO0518 0.79 -0.4
540,096 - SO0518 0.79 +1.1
540,141 - SO0518 0.82 -1.2
540,284 + -1.4
540,291 - -1.4
540,291 - -1.9
540,293 + +0.0
540,308 + +1.0
540,388 + +0.3
540,452 + -0.8
540,452 + -0.9
540,457 - -0.3
540,460 - -1.7
540,460 - -0.7
540,470 - -1.6
540,633 + SO0519 0.18 -0.3
540,633 + SO0519 0.18 +1.2
540,641 + SO0519 0.19 +0.6
540,641 - SO0519 0.19 -2.1
540,641 - SO0519 0.19 -1.2
540,648 - SO0519 0.20 -1.1
540,656 + SO0519 0.20 -1.1
540,673 - SO0519 0.22 -0.3
540,684 + SO0519 0.22 -1.6
540,684 + SO0519 0.22 -1.1
540,684 + SO0519 0.22 -1.7
540,692 - SO0519 0.23 -0.5
540,700 + SO0519 0.24 +0.2
540,782 - SO0519 0.30 -0.6
540,787 + SO0519 0.30 +0.1
540,795 - SO0519 0.31 -1.4
540,826 + SO0519 0.33 +0.9
540,868 + SO0519 0.36 -2.4
540,876 - SO0519 0.37 -3.0
540,898 - SO0519 0.39 +1.3
540,915 + SO0519 0.40 +0.7
540,923 - SO0519 0.41 +0.3
540,923 - SO0519 0.41 +1.9
540,938 - SO0519 0.42 -1.3
540,988 - SO0519 0.46 +0.6
540,990 + SO0519 0.46 -0.7
541,052 - SO0519 0.51 -1.4
541,058 + SO0519 0.51 -0.1
541,105 - SO0519 0.55 -0.1
541,123 - SO0519 0.56 -1.2
541,123 - SO0519 0.56 -0.5
541,128 - SO0519 0.56 +1.9
541,233 - SO0519 0.65 -1.7
541,245 + SO0519 0.65 -0.4
541,245 + SO0519 0.65 +0.2
541,245 + SO0519 0.65 -2.2
541,253 - SO0519 0.66 -1.6
541,310 - SO0519 0.70 +0.0
541,312 + SO0519 0.71 +0.2
541,312 + SO0519 0.71 -1.5
541,320 - SO0519 0.71 +0.2
541,340 - SO0519 0.73 -0.7
541,340 - SO0519 0.73 -0.4
541,388 + SO0519 0.76 +2.2
541,396 - SO0519 0.77 -1.9
541,585 + -0.2
541,592 + -2.5
541,615 + +0.5
541,659 - +0.4
541,661 + -0.1
541,669 - +0.8
541,669 - -1.6
541,712 - -0.2
541,847 + -1.6
541,904 + -0.4
542,047 + -0.7
542,080 + SO0520 0.10 -0.1
542,088 - SO0520 0.11 +1.2
542,088 - SO0520 0.11 +0.2
542,088 - SO0520 0.11 +0.3
542,235 - SO0520 0.15 -3.0
542,362 + SO0520 0.19 -1.0
542,370 - SO0520 0.19 +2.0
542,438 + SO0520 0.22 -2.7
542,438 - SO0520 0.22 -1.8
542,443 + SO0520 0.22 +1.4
542,523 - SO0520 0.24 -0.8
542,603 - SO0520 0.27 -0.8
542,617 - SO0520 0.27 -0.9

Or see this region's nucleotide sequence