Strain Fitness in Shewanella oneidensis MR-1 around SO0500

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
524,770	+				-1.7
524,811	-				-0.9
524,881	-				-0.4
524,898	+				-0.3
524,898	+				-1.4
524,955	+				-1.4
524,956	+				+1.2
524,956	+				-0.8
524,956	+				+0.1
524,956	+				-0.8
524,956	+				-0.1
525,011	+				-0.8
525,019	-				+0.1
525,043	-				+1.4
525,051	-				-0.5
525,089	+				+1.5
525,097	-				-0.1
525,166	-				+2.3
525,173	+				+0.0
525,179	-				-0.6
525,190	-				-1.9
525,221	+				+0.3
525,270	-				+0.1
525,279	+				-1.5
525,289	+				-0.1
525,325	-		SO0500	0.12	+0.1
525,356	+		SO0500	0.14	-0.3
525,356	+		SO0500	0.14	-0.7
525,359	-		SO0500	0.14	+0.2
525,359	-		SO0500	0.14	-0.3
525,376	+		SO0500	0.15	-0.2
525,376	+		SO0500	0.15	+0.1
525,384	-		SO0500	0.15	+0.7
525,384	-		SO0500	0.15	+0.5
525,386	+		SO0500	0.16	-1.6
525,386	+		SO0500	0.16	+0.0
525,394	-		SO0500	0.16	+0.6
525,409	+		SO0500	0.17	-0.1
525,417	-		SO0500	0.17	+0.1
525,439	-				+0.4
525,493	+		SO0500	0.22	-1.1
525,601	-		SO0500	0.29	-1.0
525,623	+		SO0500	0.30	+0.4
525,631	-		SO0500	0.31	+0.3
525,712	-		SO0500	0.35	+0.5
525,723	+		SO0500	0.36	-0.5
525,743	+		SO0500	0.37	-0.8
525,787	-		SO0500	0.40	-1.2
525,825	+		SO0500	0.42	-1.4
525,903	-		SO0500	0.47	+2.3
525,922	-		SO0500	0.48	-1.6
525,922	-		SO0500	0.48	+1.0
525,922	-		SO0500	0.48	+0.1
525,943	-		SO0500	0.50	-0.1
525,946	-		SO0500	0.50	-3.3
525,956	-		SO0500	0.50	+0.4
526,015	-		SO0500	0.54	+1.2
526,029	+		SO0500	0.55	-0.3
526,029	+		SO0500	0.55	-1.0
526,140	+		SO0500	0.62	+1.3
526,154	+		SO0500	0.63	-1.0
526,189	+		SO0500	0.65	-0.6
526,197	-		SO0500	0.65	+0.8
526,197	-		SO0500	0.65	+0.8
526,197	-		SO0500	0.65	-3.2
526,305	-		SO0500	0.72	-0.6
526,308	+		SO0500	0.72	-0.1
526,382	+		SO0500	0.77	-0.3
526,530	+		SO0500	0.86	+1.5
526,539	+		SO0500	0.86	+0.2
526,577	+		SO0500	0.88	+0.4
526,647	+				+0.8
526,647	+				-0.2
526,647	+				-0.9
526,683	-				-1.8
526,683	-				-1.3
526,743	+				+0.9
526,751	-				-0.1
526,815	+				+2.5
526,823	-				+0.4
526,826	-				-0.6
526,826	-				+0.4
526,895	-				-0.6
526,909	+				+0.1
526,941	+				+0.2
526,948	+				-0.8
526,948	+				-1.9
526,953	+				-1.1
526,956	-				+0.3
526,963	+				-0.3
526,971	-				-1.6
527,008	-				+0.3
527,022	+				+0.7
527,030	-				-0.3
527,030	-				-0.8
527,066	-				+0.4
527,068	-				+0.3
527,118	+				-0.6
527,118	+				-2.1
527,126	-				+2.2
527,126	-				-0.2
527,126	-				+0.4
527,126	-				-1.5
527,211	-				+0.2
527,238	-				-1.7
527,274	+				-1.3
527,293	+				+0.4
527,293	+				+1.5
527,417	+				+0.6
527,448	+				+0.4
527,456	-				+0.9
527,518	+				-0.1
527,604	-				+0.5
527,609	+				-0.3
527,630	-				+0.6
527,636	+				-3.9
527,665	+				-1.1
527,670	+				+0.9
527,670	+				+0.9
527,670	+				-0.6
527,678	-				+0.4
527,678	-				-1.6
527,678	-				+0.1
527,709	+				+1.3