Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hsdR-1 and SO0381 are separated by 269 nucleotides SO0381 and hsdS-1 are separated by 87 nucleotides
SO0380: hsdR-1 - type I restriction-modification system, R subunit (NCBI ptt file), at 391,526 to 394,627
hsdR-1
SO0381: SO0381 - death-on-curing family protein (NCBI ptt file), at 394,897 to 395,895
SO0381
SO0382: hsdS-1 - type I restriction-modification system, S subunit (NCBI ptt file), at 395,983 to 397,302
hsdS-1
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 393.937 kb on + strand, within hsdR-1 at 393.953 kb on + strand, within hsdR-1 at 393.973 kb on - strand, within hsdR-1 at 393.975 kb on + strand, within hsdR-1 at 393.975 kb on + strand, within hsdR-1 at 393.978 kb on - strand, within hsdR-1 at 393.983 kb on - strand, within hsdR-1 at 393.983 kb on - strand, within hsdR-1 at 394.016 kb on - strand, within hsdR-1 at 394.036 kb on - strand, within hsdR-1 at 394.037 kb on - strand, within hsdR-1 at 394.125 kb on - strand, within hsdR-1 at 394.167 kb on + strand, within hsdR-1 at 394.236 kb on + strand, within hsdR-1 at 394.236 kb on + strand, within hsdR-1 at 394.254 kb on - strand, within hsdR-1 at 394.262 kb on + strand, within hsdR-1 at 394.264 kb on - strand, within hsdR-1 at 394.264 kb on - strand, within hsdR-1 at 394.269 kb on + strand, within hsdR-1 at 394.277 kb on - strand, within hsdR-1 at 394.277 kb on - strand, within hsdR-1 at 394.294 kb on + strand, within hsdR-1 at 394.294 kb on + strand, within hsdR-1 at 394.302 kb on - strand, within hsdR-1 at 394.302 kb on - strand, within hsdR-1 at 394.302 kb on - strand, within hsdR-1 at 394.309 kb on - strand, within hsdR-1 at 394.316 kb on + strand, within hsdR-1 at 394.316 kb on + strand, within hsdR-1 at 394.338 kb on + strand at 394.358 kb on + strand at 394.366 kb on - strand at 394.366 kb on - strand at 394.383 kb on - strand at 394.425 kb on + strand at 394.427 kb on - strand at 394.435 kb on + strand at 394.457 kb on - strand at 394.476 kb on + strand at 394.484 kb on - strand at 394.501 kb on - strand at 394.523 kb on - strand at 394.526 kb on + strand at 394.534 kb on - strand at 394.536 kb on - strand at 394.596 kb on + strand at 394.602 kb on + strand at 394.602 kb on + strand at 394.602 kb on + strand at 394.610 kb on - strand at 394.636 kb on - strand at 394.636 kb on - strand at 394.926 kb on + strand at 394.992 kb on - strand at 394.992 kb on - strand at 395.027 kb on + strand, within SO0381 at 395.029 kb on - strand, within SO0381 at 395.035 kb on - strand, within SO0381 at 395.187 kb on - strand, within SO0381 at 395.193 kb on - strand, within SO0381 at 395.219 kb on - strand, within SO0381 at 395.233 kb on - strand, within SO0381 at 395.331 kb on + strand, within SO0381 at 395.345 kb on - strand, within SO0381 at 395.406 kb on + strand, within SO0381 at 395.459 kb on + strand, within SO0381 at 395.511 kb on + strand, within SO0381 at 395.526 kb on + strand, within SO0381 at 395.526 kb on + strand, within SO0381 at 395.534 kb on - strand, within SO0381 at 395.534 kb on - strand, within SO0381 at 395.647 kb on + strand, within SO0381 at 395.648 kb on - strand, within SO0381 at 395.756 kb on - strand, within SO0381 at 395.756 kb on - strand, within SO0381 at 395.917 kb on + strand at 395.917 kb on + strand at 395.930 kb on - strand at 395.957 kb on + strand at 395.957 kb on + strand at 395.965 kb on - strand at 396.005 kb on + strand at 396.013 kb on - strand at 396.050 kb on + strand at 396.082 kb on - strand at 396.179 kb on - strand, within hsdS-1 at 396.185 kb on + strand, within hsdS-1 at 396.193 kb on - strand, within hsdS-1 at 396.296 kb on + strand, within hsdS-1 at 396.309 kb on - strand, within hsdS-1 at 396.318 kb on + strand, within hsdS-1 at 396.321 kb on - strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.323 kb on + strand, within hsdS-1 at 396.326 kb on - strand, within hsdS-1 at 396.330 kb on + strand, within hsdS-1 at 396.331 kb on - strand, within hsdS-1 at 396.331 kb on - strand, within hsdS-1 at 396.355 kb on + strand, within hsdS-1 at 396.363 kb on - strand, within hsdS-1 at 396.410 kb on + strand, within hsdS-1 at 396.421 kb on - strand, within hsdS-1 at 396.428 kb on + strand, within hsdS-1 at 396.428 kb on + strand, within hsdS-1 at 396.434 kb on + strand, within hsdS-1 at 396.436 kb on - strand, within hsdS-1 at 396.485 kb on + strand, within hsdS-1 at 396.501 kb on + strand, within hsdS-1 at 396.501 kb on + strand, within hsdS-1 at 396.502 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.509 kb on - strand, within hsdS-1 at 396.518 kb on - strand, within hsdS-1 at 396.536 kb on + strand, within hsdS-1 at 396.557 kb on + strand, within hsdS-1 at 396.559 kb on + strand, within hsdS-1 at 396.567 kb on + strand, within hsdS-1 at 396.572 kb on - strand, within hsdS-1 at 396.572 kb on - strand, within hsdS-1 at 396.574 kb on + strand, within hsdS-1 at 396.582 kb on - strand, within hsdS-1 at 396.596 kb on - strand, within hsdS-1 at 396.622 kb on - strand, within hsdS-1 at 396.668 kb on + strand, within hsdS-1 at 396.668 kb on + strand, within hsdS-1 at 396.668 kb on + strand, within hsdS-1 at 396.674 kb on + strand, within hsdS-1 at 396.676 kb on - strand, within hsdS-1 at 396.677 kb on + strand, within hsdS-1 at 396.685 kb on - strand, within hsdS-1 at 396.685 kb on - strand, within hsdS-1 at 396.721 kb on - strand, within hsdS-1 at 396.721 kb on - strand, within hsdS-1 at 396.766 kb on + strand, within hsdS-1 at 396.766 kb on + strand, within hsdS-1 at 396.774 kb on - strand, within hsdS-1 at 396.790 kb on - strand, within hsdS-1 at 396.793 kb on + strand, within hsdS-1 at 396.793 kb on + strand, within hsdS-1 at 396.804 kb on + strand, within hsdS-1 at 396.807 kb on - strand, within hsdS-1 at 396.856 kb on + strand, within hsdS-1 at 396.876 kb on + strand, within hsdS-1 at 396.884 kb on - strand, within hsdS-1
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 393,937 + hsdR-1 SO0380 0.78 -0.2 393,953 + hsdR-1 SO0380 0.78 -1.5 393,973 - hsdR-1 SO0380 0.79 -0.2 393,975 + hsdR-1 SO0380 0.79 -0.7 393,975 + hsdR-1 SO0380 0.79 -1.1 393,978 - hsdR-1 SO0380 0.79 -0.1 393,983 - hsdR-1 SO0380 0.79 -0.7 393,983 - hsdR-1 SO0380 0.79 -0.4 394,016 - hsdR-1 SO0380 0.80 +0.2 394,036 - hsdR-1 SO0380 0.81 +1.3 394,037 - hsdR-1 SO0380 0.81 -1.6 394,125 - hsdR-1 SO0380 0.84 -1.9 394,167 + hsdR-1 SO0380 0.85 -1.5 394,236 + hsdR-1 SO0380 0.87 -0.9 394,236 + hsdR-1 SO0380 0.87 -2.0 394,254 - hsdR-1 SO0380 0.88 +1.6 394,262 + hsdR-1 SO0380 0.88 +0.8 394,264 - hsdR-1 SO0380 0.88 +1.5 394,264 - hsdR-1 SO0380 0.88 -1.7 394,269 + hsdR-1 SO0380 0.88 -1.9 394,277 - hsdR-1 SO0380 0.89 -1.1 394,277 - hsdR-1 SO0380 0.89 -2.0 394,294 + hsdR-1 SO0380 0.89 +1.2 394,294 + hsdR-1 SO0380 0.89 +0.1 394,302 - hsdR-1 SO0380 0.89 +0.6 394,302 - hsdR-1 SO0380 0.89 -2.1 394,302 - hsdR-1 SO0380 0.89 -0.3 394,309 - hsdR-1 SO0380 0.90 +0.0 394,316 + hsdR-1 SO0380 0.90 +0.1 394,316 + hsdR-1 SO0380 0.90 -1.1 394,338 + +1.6 394,358 + +0.2 394,366 - +0.6 394,366 - -0.3 394,383 - -0.1 394,425 + -1.2 394,427 - -0.9 394,435 + -0.3 394,457 - +0.3 394,476 + +1.6 394,484 - +0.1 394,501 - +1.0 394,523 - -0.8 394,526 + +0.4 394,534 - -0.9 394,536 - +0.3 394,596 + -0.3 394,602 + +1.3 394,602 + +1.5 394,602 + +0.7 394,610 - -0.8 394,636 - -0.1 394,636 - -1.7 394,926 + -0.6 394,992 - -0.2 394,992 - +0.5 395,027 + SO0381 0.13 -0.4 395,029 - SO0381 0.13 +0.2 395,035 - SO0381 0.14 +0.3 395,187 - SO0381 0.29 -0.5 395,193 - SO0381 0.30 +0.5 395,219 - SO0381 0.32 +0.1 395,233 - SO0381 0.34 -1.0 395,331 + SO0381 0.43 -1.4 395,345 - SO0381 0.45 -0.9 395,406 + SO0381 0.51 -1.6 395,459 + SO0381 0.56 -0.7 395,511 + SO0381 0.61 -0.7 395,526 + SO0381 0.63 -1.1 395,526 + SO0381 0.63 +0.4 395,534 - SO0381 0.64 +0.1 395,534 - SO0381 0.64 +0.4 395,647 + SO0381 0.75 -1.2 395,648 - SO0381 0.75 -1.9 395,756 - SO0381 0.86 +0.4 395,756 - SO0381 0.86 -0.1 395,917 + -0.8 395,917 + +1.6 395,930 - +1.2 395,957 + -0.8 395,957 + -1.2 395,965 - -0.2 396,005 + -1.7 396,013 - +0.5 396,050 + +1.3 396,082 - +0.9 396,179 - hsdS-1 SO0382 0.15 +0.3 396,185 + hsdS-1 SO0382 0.15 -0.8 396,193 - hsdS-1 SO0382 0.16 -0.1 396,296 + hsdS-1 SO0382 0.24 -0.7 396,309 - hsdS-1 SO0382 0.25 +0.4 396,318 + hsdS-1 SO0382 0.25 +2.4 396,321 - hsdS-1 SO0382 0.26 +0.3 396,323 + hsdS-1 SO0382 0.26 +0.5 396,323 + hsdS-1 SO0382 0.26 -0.6 396,323 + hsdS-1 SO0382 0.26 +0.9 396,323 + hsdS-1 SO0382 0.26 +0.1 396,323 + hsdS-1 SO0382 0.26 -0.2 396,326 - hsdS-1 SO0382 0.26 +1.2 396,330 + hsdS-1 SO0382 0.26 +0.6 396,331 - hsdS-1 SO0382 0.26 -1.4 396,331 - hsdS-1 SO0382 0.26 +0.5 396,355 + hsdS-1 SO0382 0.28 -1.0 396,363 - hsdS-1 SO0382 0.29 -1.0 396,410 + hsdS-1 SO0382 0.32 -0.1 396,421 - hsdS-1 SO0382 0.33 +0.7 396,428 + hsdS-1 SO0382 0.34 -1.2 396,428 + hsdS-1 SO0382 0.34 +0.6 396,434 + hsdS-1 SO0382 0.34 +0.3 396,436 - hsdS-1 SO0382 0.34 -0.4 396,485 + hsdS-1 SO0382 0.38 +0.1 396,501 + hsdS-1 SO0382 0.39 -0.3 396,501 + hsdS-1 SO0382 0.39 +2.1 396,502 - hsdS-1 SO0382 0.39 +0.5 396,509 - hsdS-1 SO0382 0.40 -1.2 396,509 - hsdS-1 SO0382 0.40 +0.8 396,509 - hsdS-1 SO0382 0.40 -0.0 396,509 - hsdS-1 SO0382 0.40 +0.2 396,518 - hsdS-1 SO0382 0.41 -0.1 396,536 + hsdS-1 SO0382 0.42 +0.0 396,557 + hsdS-1 SO0382 0.43 -0.4 396,559 + hsdS-1 SO0382 0.44 +0.3 396,567 + hsdS-1 SO0382 0.44 -0.6 396,572 - hsdS-1 SO0382 0.45 -0.1 396,572 - hsdS-1 SO0382 0.45 -0.3 396,574 + hsdS-1 SO0382 0.45 -0.7 396,582 - hsdS-1 SO0382 0.45 +0.0 396,596 - hsdS-1 SO0382 0.46 -0.4 396,622 - hsdS-1 SO0382 0.48 +1.6 396,668 + hsdS-1 SO0382 0.52 +0.5 396,668 + hsdS-1 SO0382 0.52 +1.5 396,668 + hsdS-1 SO0382 0.52 +0.0 396,674 + hsdS-1 SO0382 0.52 -0.5 396,676 - hsdS-1 SO0382 0.53 -0.8 396,677 + hsdS-1 SO0382 0.53 +0.8 396,685 - hsdS-1 SO0382 0.53 +2.3 396,685 - hsdS-1 SO0382 0.53 +1.5 396,721 - hsdS-1 SO0382 0.56 +0.2 396,721 - hsdS-1 SO0382 0.56 +1.8 396,766 + hsdS-1 SO0382 0.59 +0.5 396,766 + hsdS-1 SO0382 0.59 +0.8 396,774 - hsdS-1 SO0382 0.60 -1.4 396,790 - hsdS-1 SO0382 0.61 +0.6 396,793 + hsdS-1 SO0382 0.61 +0.4 396,793 + hsdS-1 SO0382 0.61 -2.3 396,804 + hsdS-1 SO0382 0.62 -0.0 396,807 - hsdS-1 SO0382 0.62 +2.8 396,856 + hsdS-1 SO0382 0.66 +0.6 396,876 + hsdS-1 SO0382 0.68 -0.3 396,884 - hsdS-1 SO0382 0.68 +0.5
Or see this region's nucleotide sequence