Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbB and selD overlap by 1 nucleotides selD and SO0197 are separated by 96 nucleotides
SO0195: ybbB - ybbB protein (NCBI ptt file), at 204,956 to 206,086
ybbB
SO0196: selD - selenide, water dikinase (NCBI ptt file), at 206,086 to 207,144
selD
SO0197: SO0197 - fatty acid desaturase, family 1 (NCBI ptt file), at 207,241 to 208,347
SO0197
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 205.113 kb on - strand, within ybbB at 205.153 kb on - strand, within ybbB at 205.229 kb on - strand, within ybbB at 205.344 kb on - strand, within ybbB at 205.416 kb on - strand, within ybbB at 205.416 kb on - strand, within ybbB at 205.438 kb on - strand, within ybbB at 205.483 kb on - strand, within ybbB at 205.566 kb on + strand, within ybbB at 205.598 kb on - strand, within ybbB at 205.632 kb on + strand, within ybbB at 205.650 kb on - strand, within ybbB at 205.728 kb on - strand, within ybbB at 205.786 kb on + strand, within ybbB at 205.809 kb on - strand, within ybbB at 205.809 kb on - strand, within ybbB at 205.883 kb on + strand, within ybbB at 205.891 kb on - strand, within ybbB at 205.891 kb on - strand, within ybbB at 206.113 kb on + strand at 206.119 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.232 kb on - strand, within selD at 206.232 kb on - strand, within selD at 206.336 kb on - strand, within selD at 206.391 kb on + strand, within selD at 206.399 kb on - strand, within selD at 206.403 kb on + strand, within selD at 206.431 kb on + strand, within selD at 206.438 kb on - strand, within selD at 206.439 kb on - strand, within selD at 206.439 kb on - strand, within selD at 206.465 kb on + strand, within selD at 206.465 kb on + strand, within selD at 206.465 kb on + strand, within selD at 206.666 kb on + strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.743 kb on + strand, within selD at 206.751 kb on - strand, within selD at 206.962 kb on + strand, within selD at 206.966 kb on - strand, within selD at 207.113 kb on - strand at 207.126 kb on + strand at 207.189 kb on + strand at 207.244 kb on + strand at 207.361 kb on - strand, within SO0197 at 207.367 kb on + strand, within SO0197 at 207.367 kb on + strand, within SO0197 at 207.375 kb on - strand, within SO0197 at 207.379 kb on + strand, within SO0197 at 207.656 kb on + strand, within SO0197 at 207.656 kb on + strand, within SO0197 at 207.667 kb on + strand, within SO0197 at 207.675 kb on - strand, within SO0197 at 207.675 kb on - strand, within SO0197 at 207.713 kb on + strand, within SO0197 at 207.721 kb on - strand, within SO0197 at 207.721 kb on - strand, within SO0197 at 207.736 kb on - strand, within SO0197 at 207.761 kb on + strand, within SO0197 at 207.767 kb on - strand, within SO0197 at 207.843 kb on - strand, within SO0197 at 207.850 kb on - strand, within SO0197 at 207.868 kb on - strand, within SO0197 at 207.876 kb on + strand, within SO0197 at 207.876 kb on + strand, within SO0197 at 207.933 kb on + strand, within SO0197 at 207.941 kb on - strand, within SO0197 at 207.947 kb on + strand, within SO0197 at 207.955 kb on - strand, within SO0197 at 207.961 kb on - strand, within SO0197 at 208.016 kb on + strand, within SO0197 at 208.024 kb on - strand, within SO0197 at 208.090 kb on + strand, within SO0197
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 205,113 - ybbB SO0195 0.14 +1.2 205,153 - ybbB SO0195 0.17 +0.6 205,229 - ybbB SO0195 0.24 +1.4 205,344 - ybbB SO0195 0.34 -0.4 205,416 - ybbB SO0195 0.41 +0.3 205,416 - ybbB SO0195 0.41 +2.9 205,438 - ybbB SO0195 0.43 -0.0 205,483 - ybbB SO0195 0.47 -2.1 205,566 + ybbB SO0195 0.54 +0.6 205,598 - ybbB SO0195 0.57 -2.0 205,632 + ybbB SO0195 0.60 +0.4 205,650 - ybbB SO0195 0.61 +1.1 205,728 - ybbB SO0195 0.68 +0.2 205,786 + ybbB SO0195 0.73 -0.4 205,809 - ybbB SO0195 0.75 +0.3 205,809 - ybbB SO0195 0.75 +0.1 205,883 + ybbB SO0195 0.82 +0.5 205,891 - ybbB SO0195 0.83 -1.0 205,891 - ybbB SO0195 0.83 +0.1 206,113 + -0.3 206,119 - -0.2 206,121 - +0.3 206,121 - +0.9 206,121 - -0.7 206,121 - +0.7 206,159 + -1.2 206,159 + -0.3 206,159 + +0.5 206,159 + -0.4 206,167 - +0.4 206,167 - -0.6 206,167 - -2.2 206,167 - -0.8 206,167 - -0.9 206,167 - +0.5 206,224 + selD SO0196 0.13 +0.5 206,224 + selD SO0196 0.13 -0.4 206,224 + selD SO0196 0.13 -0.3 206,224 + selD SO0196 0.13 +1.1 206,232 - selD SO0196 0.14 +1.0 206,232 - selD SO0196 0.14 -0.1 206,336 - selD SO0196 0.24 -0.7 206,391 + selD SO0196 0.29 -2.1 206,399 - selD SO0196 0.30 +2.5 206,403 + selD SO0196 0.30 -1.1 206,431 + selD SO0196 0.33 -1.3 206,438 - selD SO0196 0.33 +1.5 206,439 - selD SO0196 0.33 -0.4 206,439 - selD SO0196 0.33 -0.1 206,465 + selD SO0196 0.36 -1.3 206,465 + selD SO0196 0.36 -0.6 206,465 + selD SO0196 0.36 +1.9 206,666 + selD SO0196 0.55 -0.5 206,674 - selD SO0196 0.56 -0.5 206,674 - selD SO0196 0.56 -1.2 206,674 - selD SO0196 0.56 -0.8 206,674 - selD SO0196 0.56 -0.6 206,674 - selD SO0196 0.56 -2.9 206,743 + selD SO0196 0.62 +0.9 206,751 - selD SO0196 0.63 +0.3 206,962 + selD SO0196 0.83 +1.2 206,966 - selD SO0196 0.83 -0.8 207,113 - -1.2 207,126 + -0.4 207,189 + -2.5 207,244 + +0.5 207,361 - SO0197 0.11 -0.3 207,367 + SO0197 0.11 +1.5 207,367 + SO0197 0.11 +1.5 207,375 - SO0197 0.12 +1.9 207,379 + SO0197 0.12 -1.0 207,656 + SO0197 0.37 -1.4 207,656 + SO0197 0.37 -1.0 207,667 + SO0197 0.38 +2.5 207,675 - SO0197 0.39 +0.5 207,675 - SO0197 0.39 +1.5 207,713 + SO0197 0.43 +2.5 207,721 - SO0197 0.43 -0.3 207,721 - SO0197 0.43 +2.5 207,736 - SO0197 0.45 +2.2 207,761 + SO0197 0.47 +0.4 207,767 - SO0197 0.48 +0.9 207,843 - SO0197 0.54 +0.2 207,850 - SO0197 0.55 +0.2 207,868 - SO0197 0.57 -0.5 207,876 + SO0197 0.57 +0.9 207,876 + SO0197 0.57 -0.7 207,933 + SO0197 0.63 -1.2 207,941 - SO0197 0.63 -0.3 207,947 + SO0197 0.64 -0.2 207,955 - SO0197 0.64 -0.1 207,961 - SO0197 0.65 -1.2 208,016 + SO0197 0.70 +0.5 208,024 - SO0197 0.71 -1.3 208,090 + SO0197 0.77 +0.4
Or see this region's nucleotide sequence