Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0190 and cysQ-1 are separated by 69 nucleotides cysQ-1 and SO0192 are separated by 7 nucleotides SO0192 and SO0193 are separated by 235 nucleotides SO0193 and SO0194 overlap by 10 nucleotides
SO0190: SO0190 - MutT/nudix family protein (NCBI ptt file), at 200,294 to 200,845
SO0190
SO0191: cysQ-1 - cysQ protein (NCBI ptt file), at 200,915 to 201,727
cysQ-1
SO0192: SO0192 - acetyltransferase, GNAT family (NCBI ptt file), at 201,735 to 202,178
SO0192
SO0193: SO0193 - transcriptional regulator, TetR family (NCBI ptt file), at 202,414 to 203,025
SO0193
SO0194: SO0194 - acyltransferase family protein (NCBI ptt file), at 203,016 to 204,878
SO0194
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 200.737 kb on + strand, within SO0190 at 200.743 kb on + strand, within SO0190 at 200.751 kb on - strand, within SO0190 at 200.965 kb on + strand at 200.989 kb on + strand at 201.040 kb on - strand, within cysQ-1 at 201.194 kb on + strand, within cysQ-1 at 201.241 kb on + strand, within cysQ-1 at 201.292 kb on + strand, within cysQ-1 at 201.371 kb on + strand, within cysQ-1 at 201.379 kb on - strand, within cysQ-1 at 201.392 kb on + strand, within cysQ-1 at 201.399 kb on + strand, within cysQ-1 at 201.400 kb on - strand, within cysQ-1 at 201.454 kb on + strand, within cysQ-1 at 201.499 kb on - strand, within cysQ-1 at 201.499 kb on - strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.512 kb on + strand, within cysQ-1 at 201.629 kb on + strand, within cysQ-1 at 201.696 kb on - strand at 201.789 kb on + strand, within SO0192 at 201.820 kb on - strand, within SO0192 at 201.915 kb on + strand, within SO0192 at 201.966 kb on + strand, within SO0192 at 201.979 kb on + strand, within SO0192 at 201.979 kb on + strand, within SO0192 at 201.979 kb on + strand, within SO0192 at 201.987 kb on - strand, within SO0192 at 201.992 kb on - strand, within SO0192 at 201.998 kb on - strand, within SO0192 at 202.012 kb on + strand, within SO0192 at 202.020 kb on - strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.034 kb on + strand, within SO0192 at 202.042 kb on - strand, within SO0192 at 202.042 kb on - strand, within SO0192 at 202.042 kb on - strand, within SO0192 at 202.115 kb on + strand, within SO0192 at 202.191 kb on - strand at 202.273 kb on + strand at 202.288 kb on - strand at 202.295 kb on - strand at 202.323 kb on - strand at 202.411 kb on - strand at 202.417 kb on - strand at 202.429 kb on + strand at 202.505 kb on + strand, within SO0193 at 202.565 kb on - strand, within SO0193 at 202.617 kb on - strand, within SO0193 at 202.716 kb on - strand, within SO0193 at 202.721 kb on + strand, within SO0193 at 202.721 kb on + strand, within SO0193 at 202.729 kb on - strand, within SO0193 at 202.729 kb on - strand, within SO0193 at 202.744 kb on + strand, within SO0193 at 202.754 kb on + strand, within SO0193 at 202.788 kb on - strand, within SO0193 at 202.828 kb on - strand, within SO0193 at 202.830 kb on + strand, within SO0193 at 202.878 kb on + strand, within SO0193 at 202.878 kb on + strand, within SO0193 at 202.952 kb on - strand, within SO0193 at 203.084 kb on - strand at 203.113 kb on + strand at 203.121 kb on - strand at 203.121 kb on - strand at 203.132 kb on + strand at 203.140 kb on - strand at 203.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 200,737 + SO0190 0.80 -0.5 200,743 + SO0190 0.81 +0.7 200,751 - SO0190 0.83 +0.8 200,965 + -0.9 200,989 + +1.2 201,040 - cysQ-1 SO0191 0.15 +0.1 201,194 + cysQ-1 SO0191 0.34 -0.7 201,241 + cysQ-1 SO0191 0.40 +0.5 201,292 + cysQ-1 SO0191 0.46 +0.4 201,371 + cysQ-1 SO0191 0.56 +0.9 201,379 - cysQ-1 SO0191 0.57 -0.9 201,392 + cysQ-1 SO0191 0.59 +0.0 201,399 + cysQ-1 SO0191 0.60 +0.7 201,400 - cysQ-1 SO0191 0.60 -0.9 201,454 + cysQ-1 SO0191 0.66 +1.1 201,499 - cysQ-1 SO0191 0.72 -1.4 201,499 - cysQ-1 SO0191 0.72 +1.5 201,512 + cysQ-1 SO0191 0.73 -1.7 201,512 + cysQ-1 SO0191 0.73 +0.6 201,512 + cysQ-1 SO0191 0.73 +1.0 201,512 + cysQ-1 SO0191 0.73 -1.7 201,512 + cysQ-1 SO0191 0.73 +0.5 201,629 + cysQ-1 SO0191 0.88 +2.5 201,696 - -2.5 201,789 + SO0192 0.12 -0.1 201,820 - SO0192 0.19 +0.0 201,915 + SO0192 0.41 +2.1 201,966 + SO0192 0.52 +0.9 201,979 + SO0192 0.55 -2.4 201,979 + SO0192 0.55 -0.1 201,979 + SO0192 0.55 +2.2 201,987 - SO0192 0.57 +1.4 201,992 - SO0192 0.58 +0.3 201,998 - SO0192 0.59 +1.3 202,012 + SO0192 0.62 +0.2 202,020 - SO0192 0.64 -1.6 202,034 + SO0192 0.67 +1.0 202,034 + SO0192 0.67 +0.6 202,034 + SO0192 0.67 +0.9 202,034 + SO0192 0.67 -1.2 202,042 - SO0192 0.69 -0.6 202,042 - SO0192 0.69 -0.7 202,042 - SO0192 0.69 -0.4 202,115 + SO0192 0.86 +0.5 202,191 - -0.7 202,273 + -2.3 202,288 - +0.1 202,295 - +0.2 202,323 - -0.1 202,411 - -0.7 202,417 - +0.8 202,429 + +0.9 202,505 + SO0193 0.15 -0.5 202,565 - SO0193 0.25 -2.5 202,617 - SO0193 0.33 +1.8 202,716 - SO0193 0.49 +2.5 202,721 + SO0193 0.50 -0.3 202,721 + SO0193 0.50 +1.4 202,729 - SO0193 0.51 +0.6 202,729 - SO0193 0.51 -0.8 202,744 + SO0193 0.54 -1.7 202,754 + SO0193 0.56 +0.6 202,788 - SO0193 0.61 +1.7 202,828 - SO0193 0.68 +1.4 202,830 + SO0193 0.68 -1.9 202,878 + SO0193 0.76 +1.5 202,878 + SO0193 0.76 +0.5 202,952 - SO0193 0.88 -0.4 203,084 - +2.9 203,113 + -1.6 203,121 - +1.5 203,121 - +0.4 203,132 + +1.0 203,140 - -0.6 203,143 - -0.6
Or see this region's nucleotide sequence