Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0150 and SO0151 are separated by 271 nucleotides
SO0150: SO0150 - lipoprotein, putative (NCBI ptt file), at 158,400 to 159,176
SO0150
SO0151: SO0151 - hypothetical SAM-dependent methyltransferase (NCBI ptt file), at 159,448 to 160,215
SO0151
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.411 kb on - strand at 157.412 kb on - strand at 157.472 kb on + strand at 157.472 kb on + strand at 157.518 kb on - strand at 157.575 kb on + strand at 157.583 kb on - strand at 157.595 kb on - strand at 157.621 kb on + strand at 157.621 kb on + strand at 157.629 kb on - strand at 157.794 kb on + strand at 157.898 kb on + strand at 157.955 kb on + strand at 158.042 kb on + strand at 158.050 kb on - strand at 158.123 kb on - strand at 158.143 kb on - strand at 158.165 kb on + strand at 158.166 kb on + strand at 158.198 kb on + strand at 158.198 kb on + strand at 158.306 kb on + strand at 158.308 kb on + strand at 158.389 kb on - strand at 158.414 kb on - strand at 158.445 kb on + strand at 158.445 kb on + strand at 158.445 kb on + strand at 158.453 kb on - strand at 158.453 kb on - strand at 158.467 kb on + strand at 158.479 kb on + strand, within SO0150 at 158.481 kb on - strand, within SO0150 at 158.534 kb on - strand, within SO0150 at 158.606 kb on + strand, within SO0150 at 158.631 kb on - strand, within SO0150 at 158.657 kb on - strand, within SO0150 at 158.672 kb on + strand, within SO0150 at 158.684 kb on + strand, within SO0150 at 158.730 kb on - strand, within SO0150 at 158.762 kb on - strand, within SO0150 at 158.789 kb on + strand, within SO0150 at 158.797 kb on - strand, within SO0150 at 158.961 kb on + strand, within SO0150 at 159.026 kb on + strand, within SO0150 at 159.026 kb on - strand, within SO0150 at 159.125 kb on + strand at 159.163 kb on - strand at 159.382 kb on + strand at 159.405 kb on + strand at 159.408 kb on - strand at 159.428 kb on - strand at 159.499 kb on + strand at 159.531 kb on - strand, within SO0151 at 159.726 kb on + strand, within SO0151 at 159.811 kb on + strand, within SO0151 at 159.830 kb on + strand, within SO0151 at 159.863 kb on + strand, within SO0151 at 159.880 kb on + strand, within SO0151 at 159.882 kb on + strand, within SO0151 at 159.890 kb on - strand, within SO0151 at 159.890 kb on - strand, within SO0151 at 159.972 kb on + strand, within SO0151 at 160.014 kb on - strand, within SO0151 at 160.015 kb on - strand, within SO0151 at 160.015 kb on - strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.063 kb on + strand, within SO0151 at 160.071 kb on - strand, within SO0151 at 160.071 kb on - strand, within SO0151 at 160.110 kb on - strand, within SO0151 at 160.129 kb on - strand, within SO0151 at 160.129 kb on - strand, within SO0151 at 160.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 157,411 - -1.8 157,412 - -0.2 157,472 + -0.1 157,472 + +0.6 157,518 - -0.4 157,575 + -0.8 157,583 - -3.5 157,595 - -0.4 157,621 + +0.7 157,621 + +0.9 157,629 - +0.3 157,794 + +0.2 157,898 + +1.2 157,955 + -0.9 158,042 + -1.8 158,050 - +1.4 158,123 - -0.1 158,143 - -2.4 158,165 + -0.0 158,166 + +0.9 158,198 + -1.3 158,198 + -2.0 158,306 + -0.7 158,308 + +2.1 158,389 - -1.8 158,414 - -0.8 158,445 + -0.6 158,445 + -1.3 158,445 + +0.7 158,453 - -0.0 158,453 - +0.2 158,467 + -1.3 158,479 + SO0150 0.10 +0.1 158,481 - SO0150 0.10 -2.3 158,534 - SO0150 0.17 +1.9 158,606 + SO0150 0.27 +0.2 158,631 - SO0150 0.30 -1.1 158,657 - SO0150 0.33 -0.1 158,672 + SO0150 0.35 +0.5 158,684 + SO0150 0.37 +0.3 158,730 - SO0150 0.42 +0.9 158,762 - SO0150 0.47 -0.5 158,789 + SO0150 0.50 -1.5 158,797 - SO0150 0.51 +1.5 158,961 + SO0150 0.72 +3.4 159,026 + SO0150 0.81 -0.1 159,026 - SO0150 0.81 -0.2 159,125 + -0.2 159,163 - -0.3 159,382 + +0.6 159,405 + +0.5 159,408 - -1.7 159,428 - +0.3 159,499 + +0.3 159,531 - SO0151 0.11 +0.8 159,726 + SO0151 0.36 +0.6 159,811 + SO0151 0.47 -0.8 159,830 + SO0151 0.50 -0.1 159,863 + SO0151 0.54 +1.7 159,880 + SO0151 0.56 +0.0 159,882 + SO0151 0.57 -0.8 159,890 - SO0151 0.58 -1.1 159,890 - SO0151 0.58 -0.5 159,972 + SO0151 0.68 +0.3 160,014 - SO0151 0.74 +1.4 160,015 - SO0151 0.74 -1.4 160,015 - SO0151 0.74 -0.2 160,063 + SO0151 0.80 -2.2 160,063 + SO0151 0.80 -0.3 160,063 + SO0151 0.80 -1.7 160,063 + SO0151 0.80 +2.9 160,063 + SO0151 0.80 -0.5 160,071 - SO0151 0.81 -2.2 160,071 - SO0151 0.81 +1.5 160,110 - SO0151 0.86 -0.6 160,129 - SO0151 0.89 -1.8 160,129 - SO0151 0.89 +1.7 160,173 + -1.2
Or see this region's nucleotide sequence