Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0081 and SO0082 are separated by 3 nucleotides SO0082 and SO0083 are separated by 187 nucleotides SO0083 and SO0084 are separated by 57 nucleotides SO0084 and SO0085 are separated by 375 nucleotides
SO0081: SO0081 - conserved hypothetical protein (NCBI ptt file), at 93,827 to 94,156
SO0081
SO0082: SO0082 - transcriptional regulator, MerR family (NCBI ptt file), at 94,160 to 94,516
SO0082
SO0083: SO0083 - carboxymuconolactone decarboxylase family protein (NCBI ptt file), at 94,704 to 95,090
SO0083
SO0084: SO0084 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file), at 95,148 to 95,828
SO0084
SO0085: SO0085 - hypothetical protein (NCBI ptt file), at 96,204 to 96,626
SO0085
Position (kb) 95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 94.186 kb on + strand at 94.304 kb on - strand, within SO0082 at 94.364 kb on - strand, within SO0082 at 94.377 kb on - strand, within SO0082 at 94.434 kb on - strand, within SO0082 at 94.451 kb on + strand, within SO0082 at 94.597 kb on + strand at 94.605 kb on - strand at 94.654 kb on + strand at 94.663 kb on - strand at 94.669 kb on - strand at 94.669 kb on - strand at 94.670 kb on - strand at 94.722 kb on + strand at 94.740 kb on - strand at 94.811 kb on - strand, within SO0083 at 94.839 kb on - strand, within SO0083 at 94.891 kb on - strand, within SO0083 at 94.934 kb on - strand, within SO0083 at 94.938 kb on + strand, within SO0083 at 95.316 kb on + strand, within SO0084 at 95.471 kb on + strand, within SO0084 at 95.517 kb on + strand, within SO0084 at 95.541 kb on + strand, within SO0084 at 95.549 kb on - strand, within SO0084 at 95.575 kb on + strand, within SO0084 at 95.575 kb on + strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.606 kb on - strand, within SO0084 at 95.637 kb on + strand, within SO0084 at 95.642 kb on + strand, within SO0084 at 95.645 kb on - strand, within SO0084 at 95.782 kb on - strand at 95.802 kb on + strand at 95.802 kb on + strand at 95.810 kb on - strand at 95.832 kb on - strand at 95.870 kb on + strand at 95.914 kb on + strand at 95.926 kb on + strand at 95.934 kb on - strand at 95.935 kb on - strand at 95.942 kb on + strand at 96.051 kb on - strand at 96.066 kb on - strand at 96.085 kb on - strand at 96.150 kb on + strand at 96.171 kb on + strand at 96.179 kb on - strand at 96.186 kb on + strand at 96.186 kb on + strand at 96.187 kb on - strand at 96.275 kb on + strand, within SO0085 at 96.280 kb on - strand, within SO0085 at 96.285 kb on + strand, within SO0085 at 96.428 kb on + strand, within SO0085 at 96.442 kb on + strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.493 kb on - strand, within SO0085 at 96.533 kb on + strand, within SO0085 at 96.534 kb on + strand, within SO0085 at 96.549 kb on - strand, within SO0085 at 96.556 kb on + strand, within SO0085 at 96.603 kb on + strand at 96.604 kb on + strand at 96.604 kb on + strand at 96.604 kb on + strand at 96.612 kb on - strand at 96.612 kb on - strand at 96.614 kb on + strand at 96.624 kb on - strand at 96.657 kb on + strand at 96.657 kb on + strand at 96.657 kb on + strand at 96.665 kb on - strand at 96.665 kb on - strand at 96.665 kb on - strand at 96.756 kb on - strand at 96.758 kb on - strand at 96.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 94,186 + -2.1 94,304 - SO0082 0.40 -0.4 94,364 - SO0082 0.57 -1.3 94,377 - SO0082 0.61 +1.5 94,434 - SO0082 0.77 -0.8 94,451 + SO0082 0.82 +1.4 94,597 + -1.4 94,605 - +1.5 94,654 + +0.3 94,663 - -0.1 94,669 - +2.9 94,669 - -0.6 94,670 - -2.1 94,722 + -0.8 94,740 - -0.6 94,811 - SO0083 0.28 +0.2 94,839 - SO0083 0.35 +0.7 94,891 - SO0083 0.48 -0.0 94,934 - SO0083 0.59 -1.0 94,938 + SO0083 0.60 -3.0 95,316 + SO0084 0.25 -0.6 95,471 + SO0084 0.47 -0.1 95,517 + SO0084 0.54 -1.6 95,541 + SO0084 0.58 -0.7 95,549 - SO0084 0.59 -1.4 95,575 + SO0084 0.63 -0.3 95,575 + SO0084 0.63 +0.4 95,583 - SO0084 0.64 -0.6 95,583 - SO0084 0.64 -0.7 95,583 - SO0084 0.64 -0.1 95,583 - SO0084 0.64 -0.1 95,583 - SO0084 0.64 -0.3 95,606 - SO0084 0.67 -0.1 95,637 + SO0084 0.72 -0.5 95,642 + SO0084 0.73 -0.4 95,645 - SO0084 0.73 +0.6 95,782 - +0.3 95,802 + -0.8 95,802 + -0.2 95,810 - -0.7 95,832 - +0.3 95,870 + -1.4 95,914 + +0.7 95,926 + -0.1 95,934 - -0.8 95,935 - +1.6 95,942 + +0.3 96,051 - -0.2 96,066 - +0.2 96,085 - +0.2 96,150 + +1.3 96,171 + -0.5 96,179 - -0.3 96,186 + -1.2 96,186 + +1.3 96,187 - +0.3 96,275 + SO0085 0.17 -1.8 96,280 - SO0085 0.18 -2.0 96,285 + SO0085 0.19 -0.3 96,428 + SO0085 0.53 +0.6 96,442 + SO0085 0.56 -0.2 96,451 - SO0085 0.58 -0.1 96,451 - SO0085 0.58 -0.2 96,451 - SO0085 0.58 -2.0 96,493 - SO0085 0.68 -0.0 96,533 + SO0085 0.78 +1.0 96,534 + SO0085 0.78 +0.8 96,549 - SO0085 0.82 -1.7 96,556 + SO0085 0.83 +1.1 96,603 + -0.8 96,604 + +0.1 96,604 + -0.6 96,604 + +1.0 96,612 - +1.0 96,612 - -0.4 96,614 + -0.6 96,624 - +0.6 96,657 + -0.5 96,657 + +0.7 96,657 + +0.6 96,665 - -0.6 96,665 - +0.5 96,665 - +0.7 96,756 - +2.0 96,758 - +0.3 96,768 + -1.5
Or see this region's nucleotide sequence