Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0033 and SO0034 are separated by 83 nucleotides SO0034 and smg are separated by 2 nucleotides smg and SO0036 are separated by 112 nucleotides
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
SO0034: SO0034 - DNA processing protein DprA, putative (NCBI ptt file), at 39,244 to 40,260
SO0034
SO0035: smg - smg protein (NCBI ptt file), at 40,263 to 40,739
smg
SO0036: SO0036 - topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file), at 40,852 to 41,418
SO0036
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033 at 38.434 kb on - strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.483 kb on + strand, within SO0033 at 38.485 kb on + strand, within SO0033 at 38.543 kb on + strand, within SO0033 at 38.577 kb on + strand, within SO0033 at 38.585 kb on - strand, within SO0033 at 38.603 kb on + strand, within SO0033 at 38.712 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.831 kb on + strand, within SO0033 at 38.836 kb on + strand, within SO0033 at 38.859 kb on + strand, within SO0033 at 38.862 kb on - strand, within SO0033 at 38.877 kb on - strand, within SO0033 at 38.882 kb on - strand, within SO0033 at 38.977 kb on - strand, within SO0033 at 38.992 kb on + strand, within SO0033 at 39.153 kb on - strand at 39.207 kb on + strand at 39.257 kb on + strand at 39.265 kb on - strand at 39.362 kb on + strand, within SO0034 at 39.408 kb on + strand, within SO0034 at 39.408 kb on + strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.421 kb on - strand, within SO0034 at 39.470 kb on + strand, within SO0034 at 39.615 kb on - strand, within SO0034 at 39.616 kb on - strand, within SO0034 at 39.625 kb on + strand, within SO0034 at 39.625 kb on - strand, within SO0034 at 39.625 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.649 kb on + strand, within SO0034 at 39.661 kb on + strand, within SO0034 at 39.737 kb on + strand, within SO0034 at 39.763 kb on + strand, within SO0034 at 39.880 kb on - strand, within SO0034 at 40.061 kb on + strand, within SO0034 at 40.227 kb on + strand at 40.234 kb on + strand at 40.234 kb on + strand at 40.239 kb on + strand at 40.239 kb on + strand at 40.246 kb on + strand at 40.247 kb on - strand at 40.252 kb on - strand at 40.335 kb on + strand, within smg at 40.344 kb on - strand, within smg at 40.350 kb on - strand, within smg at 40.362 kb on + strand, within smg at 40.430 kb on + strand, within smg at 40.430 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.435 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.436 kb on + strand, within smg at 40.438 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.443 kb on - strand, within smg at 40.445 kb on + strand, within smg at 40.511 kb on - strand, within smg at 40.564 kb on + strand, within smg at 40.660 kb on - strand, within smg at 40.727 kb on + strand at 40.735 kb on - strand at 40.750 kb on - strand at 40.878 kb on + strand at 40.978 kb on - strand, within SO0036 at 41.015 kb on - strand, within SO0036 at 41.023 kb on - strand, within SO0036 at 41.025 kb on + strand, within SO0036 at 41.057 kb on + strand, within SO0036 at 41.149 kb on - strand, within SO0036 at 41.180 kb on + strand, within SO0036 at 41.188 kb on - strand, within SO0036 at 41.216 kb on + strand, within SO0036 at 41.216 kb on + strand, within SO0036
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 38,260 + SO0033 0.21 -0.5 38,265 + SO0033 0.21 +0.9 38,273 - SO0033 0.22 -1.2 38,273 - SO0033 0.22 +1.3 38,273 - SO0033 0.22 +0.0 38,287 + SO0033 0.23 -1.0 38,287 + SO0033 0.23 -0.1 38,287 + SO0033 0.23 +0.2 38,295 - SO0033 0.24 -1.1 38,295 - SO0033 0.24 +1.9 38,295 - SO0033 0.24 -0.1 38,330 + SO0033 0.27 -2.6 38,434 - SO0033 0.36 -0.3 38,454 + SO0033 0.38 +0.1 38,454 + SO0033 0.38 -3.5 38,476 - SO0033 0.40 +0.7 38,476 - SO0033 0.40 -1.0 38,483 + SO0033 0.40 +0.0 38,485 + SO0033 0.41 +0.8 38,543 + SO0033 0.46 -0.8 38,577 + SO0033 0.49 -2.3 38,585 - SO0033 0.49 +0.4 38,603 + SO0033 0.51 +0.2 38,712 + SO0033 0.61 +0.4 38,779 + SO0033 0.66 -1.8 38,779 + SO0033 0.66 -0.8 38,779 + SO0033 0.66 -0.3 38,787 - SO0033 0.67 -1.2 38,787 - SO0033 0.67 +1.6 38,787 - SO0033 0.67 +1.0 38,787 - SO0033 0.67 +1.3 38,831 + SO0033 0.71 +0.9 38,836 + SO0033 0.71 +1.0 38,859 + SO0033 0.73 +0.8 38,862 - SO0033 0.74 +0.9 38,877 - SO0033 0.75 +0.0 38,882 - SO0033 0.75 -1.0 38,977 - SO0033 0.84 -0.6 38,992 + SO0033 0.85 +1.3 39,153 - +0.4 39,207 + +0.2 39,257 + -0.5 39,265 - -2.3 39,362 + SO0034 0.12 +0.1 39,408 + SO0034 0.16 +0.2 39,408 + SO0034 0.16 +0.5 39,416 - SO0034 0.17 -2.8 39,416 - SO0034 0.17 -0.1 39,416 - SO0034 0.17 -0.6 39,421 - SO0034 0.17 +0.6 39,470 + SO0034 0.22 -0.2 39,615 - SO0034 0.36 -1.3 39,616 - SO0034 0.37 +0.4 39,625 + SO0034 0.37 +0.9 39,625 - SO0034 0.37 +1.3 39,625 - SO0034 0.37 +1.9 39,633 - SO0034 0.38 +0.7 39,633 - SO0034 0.38 -0.8 39,633 - SO0034 0.38 -1.4 39,649 + SO0034 0.40 -0.1 39,661 + SO0034 0.41 +1.1 39,737 + SO0034 0.48 +0.9 39,763 + SO0034 0.51 +0.2 39,880 - SO0034 0.63 -1.1 40,061 + SO0034 0.80 +0.6 40,227 + +0.1 40,234 + -0.3 40,234 + -1.0 40,239 + +0.6 40,239 + -0.5 40,246 + -0.4 40,247 - +1.1 40,252 - -1.9 40,335 + smg SO0035 0.15 +0.1 40,344 - smg SO0035 0.17 -0.2 40,350 - smg SO0035 0.18 +0.5 40,362 + smg SO0035 0.21 -1.0 40,430 + smg SO0035 0.35 +0.8 40,430 + smg SO0035 0.35 -1.0 40,435 + smg SO0035 0.36 +0.2 40,435 + smg SO0035 0.36 +1.0 40,435 + smg SO0035 0.36 +1.3 40,435 + smg SO0035 0.36 -0.2 40,435 + smg SO0035 0.36 -1.0 40,436 + smg SO0035 0.36 -1.2 40,436 + smg SO0035 0.36 -0.8 40,436 + smg SO0035 0.36 -0.1 40,438 - smg SO0035 0.37 +0.6 40,443 - smg SO0035 0.38 -0.6 40,443 - smg SO0035 0.38 +0.2 40,443 - smg SO0035 0.38 -0.3 40,443 - smg SO0035 0.38 -0.6 40,443 - smg SO0035 0.38 +1.1 40,443 - smg SO0035 0.38 +0.9 40,443 - smg SO0035 0.38 -0.5 40,443 - smg SO0035 0.38 +2.8 40,443 - smg SO0035 0.38 -0.0 40,445 + smg SO0035 0.38 +0.7 40,511 - smg SO0035 0.52 +0.4 40,564 + smg SO0035 0.63 +0.4 40,660 - smg SO0035 0.83 -1.0 40,727 + +1.2 40,735 - -1.1 40,750 - -0.1 40,878 + +0.2 40,978 - SO0036 0.22 -0.1 41,015 - SO0036 0.29 -1.2 41,023 - SO0036 0.30 -0.7 41,025 + SO0036 0.31 -1.2 41,057 + SO0036 0.36 -0.3 41,149 - SO0036 0.52 +0.6 41,180 + SO0036 0.58 +0.2 41,188 - SO0036 0.59 +0.9 41,216 + SO0036 0.64 -0.8 41,216 + SO0036 0.64 -3.0
Or see this region's nucleotide sequence