Strain Fitness in Shewanella oneidensis MR-1 around SO_3628

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,786,499	+		SO3626	0.78	-2.0
3,786,504	+		SO3626	0.81	-0.6
3,786,507	-		SO3626	0.82	-0.7
3,786,508	-		SO3626	0.83	-0.8
3,786,509	-		SO3626	0.84	+0.4
3,786,529	+				-1.6
3,786,659	+				+2.1
3,786,682	+				-0.5
3,786,696	+				-0.3
3,786,699	+				-1.5
3,786,704	-				-0.6
3,786,709	+				-0.4
3,786,709	+				-0.2
3,786,714	+				+1.0
3,786,714	+				-0.4
3,786,714	+				-0.6
3,786,714	+				-0.8
3,786,717	+				+2.7
3,786,717	+				+1.3
3,786,720	-				+0.4
3,786,722	+				-0.8
3,786,722	-				-1.7
3,786,722	-				-1.3
3,786,730	-				-1.3
3,786,787	+		SO3627	0.16	+0.4
3,786,787	+		SO3627	0.16	+0.4
3,786,795	-		SO3627	0.17	-0.0
3,786,795	-		SO3627	0.17	+0.9
3,786,795	-		SO3627	0.17	-0.5
3,786,801	-		SO3627	0.18	+1.0
3,786,833	-		SO3627	0.22	-0.7
3,786,841	-		SO3627	0.23	-1.7
3,786,841	-		SO3627	0.23	-0.5
3,786,841	-		SO3627	0.23	+0.2
3,786,841	-		SO3627	0.23	+0.2
3,786,841	-		SO3627	0.23	-1.4
3,786,911	-		SO3627	0.32	-1.5
3,786,935	+		SO3627	0.35	+0.5
3,786,982	+		SO3627	0.41	+0.7
3,786,982	+		SO3627	0.41	+0.7
3,786,982	+		SO3627	0.41	+1.0
3,786,990	-		SO3627	0.42	+1.1
3,786,990	-		SO3627	0.42	-1.7
3,786,990	-		SO3627	0.42	-0.0
3,787,027	-		SO3627	0.46	+2.0
3,787,035	+		SO3627	0.47	-1.4
3,787,043	-		SO3627	0.48	+0.7
3,787,077	+		SO3627	0.53	+0.8
3,787,078	+		SO3627	0.53	+1.1
3,787,086	-		SO3627	0.54	-0.6
3,787,086	-		SO3627	0.54	-0.7
3,787,086	-		SO3627	0.54	+1.4
3,787,088	+		SO3627	0.54	+0.4
3,787,088	+		SO3627	0.54	-1.2
3,787,088	+		SO3627	0.54	-0.8
3,787,088	+		SO3627	0.54	+0.5
3,787,088	+		SO3627	0.54	-1.5
3,787,088	+		SO3627	0.54	+0.8
3,787,096	-		SO3627	0.55	-1.0
3,787,096	-		SO3627	0.55	-0.4
3,787,096	-		SO3627	0.55	-0.2
3,787,101	+		SO3627	0.56	-1.5
3,787,101	+		SO3627	0.56	-0.7
3,787,101	+		SO3627	0.56	+0.7
3,787,102	+		SO3627	0.56	+3.9
3,787,103	+		SO3627	0.56	-1.2
3,787,103	+		SO3627	0.56	-1.2
3,787,109	-		SO3627	0.57	+1.3
3,787,110	-		SO3627	0.57	-1.4
3,787,110	-		SO3627	0.57	+0.1
3,787,111	-		SO3627	0.57	-3.3
3,787,111	-		SO3627	0.57	+0.2
3,787,111	-		SO3627	0.57	-0.5
3,787,111	-		SO3627	0.57	+1.4
3,787,112	+		SO3627	0.57	-1.1
3,787,112	+		SO3627	0.57	+1.8
3,787,115	-		SO3627	0.58	+1.4
3,787,117	+		SO3627	0.58	+1.2
3,787,117	+		SO3627	0.58	-1.1
3,787,117	+		SO3627	0.58	+1.7
3,787,117	+		SO3627	0.58	-0.9
3,787,117	+		SO3627	0.58	-0.5
3,787,117	+		SO3627	0.58	-0.9
3,787,117	+		SO3627	0.58	+0.1
3,787,117	+		SO3627	0.58	+2.5
3,787,117	+		SO3627	0.58	-0.7
3,787,117	+		SO3627	0.58	+1.0
3,787,117	+		SO3627	0.58	+0.7
3,787,117	+		SO3627	0.58	-1.9
3,787,117	+		SO3627	0.58	-0.3
3,787,117	+		SO3627	0.58	-0.7
3,787,117	+		SO3627	0.58	+1.7
3,787,117	+		SO3627	0.58	+0.1
3,787,117	+		SO3627	0.58	-1.2
3,787,117	+		SO3627	0.58	+0.7
3,787,117	+		SO3627	0.58	-1.4
3,787,117	+		SO3627	0.58	+1.5
3,787,117	+		SO3627	0.58	+2.5
3,787,117	+		SO3627	0.58	+0.3
3,787,117	+		SO3627	0.58	-0.5
3,787,117	+		SO3627	0.58	+0.8
3,787,117	+		SO3627	0.58	+0.3
3,787,117	+		SO3627	0.58	-0.2
3,787,117	+		SO3627	0.58	-2.4
3,787,125	-		SO3627	0.59	-0.2
3,787,125	-		SO3627	0.59	-1.0
3,787,125	-		SO3627	0.59	-0.7
3,787,125	-		SO3627	0.59	+1.1
3,787,125	-		SO3627	0.59	-1.7
3,787,125	-		SO3627	0.59	-1.3
3,787,125	-		SO3627	0.59	+3.7
3,787,125	-		SO3627	0.59	-0.8
3,787,125	-		SO3627	0.59	+0.8
3,787,125	-		SO3627	0.59	+1.0
3,787,125	-		SO3627	0.59	-0.9
3,787,125	-		SO3627	0.59	+0.3
3,787,125	-		SO3627	0.59	+1.0
3,787,125	-		SO3627	0.59	-0.3
3,787,125	-		SO3627	0.59	-0.1
3,787,125	-		SO3627	0.59	+0.6
3,787,125	-		SO3627	0.59	+1.2
3,787,125	-		SO3627	0.59	-0.8
3,787,125	-		SO3627	0.59	+0.6
3,787,125	-		SO3627	0.59	+0.7
3,787,125	-		SO3627	0.59	+1.6
3,787,125	-		SO3627	0.59	-0.8
3,787,125	-		SO3627	0.59	-0.4
3,787,125	-		SO3627	0.59	+0.9
3,787,125	-		SO3627	0.59	-0.1
3,787,125	-		SO3627	0.59	+0.6
3,787,125	-		SO3627	0.59	+0.5
3,787,125	-		SO3627	0.59	+0.2
3,787,125	-		SO3627	0.59	-2.0
3,787,125	-		SO3627	0.59	-1.5
3,787,125	-		SO3627	0.59	-1.5
3,787,125	-		SO3627	0.59	+0.3
3,787,146	+		SO3627	0.62	+1.5
3,787,157	+		SO3627	0.63	-0.2
3,787,179	+		SO3627	0.66	+0.6
3,787,184	+		SO3627	0.66	-0.6
3,787,185	-		SO3627	0.67	+0.7
3,787,246	-		SO3627	0.74	-0.0
3,787,246	-		SO3627	0.74	+0.1
3,787,272	+		SO3627	0.78	-0.9
3,787,272	+		SO3627	0.78	+0.3
3,787,280	-		SO3627	0.79	-0.1
3,787,293	-		SO3627	0.80	-0.8
3,787,300	-		SO3627	0.81	+0.3
3,787,315	+		SO3627	0.83	+2.2
3,787,315	+		SO3627	0.83	-1.9
3,787,315	+		SO3627	0.83	+0.3
3,787,315	+		SO3627	0.83	-0.5
3,787,315	+		SO3627	0.83	+0.2
3,787,330	+		SO3627	0.85	+0.9
3,787,330	+		SO3627	0.85	-0.6
3,787,330	+		SO3627	0.85	+0.0
3,787,330	+		SO3627	0.85	+0.7
3,787,330	+		SO3627	0.85	-0.3
3,787,338	-		SO3627	0.86	+0.1
3,787,338	-		SO3627	0.86	-1.8
3,787,338	-		SO3627	0.86	-0.2
3,787,338	-		SO3627	0.86	-0.3
3,787,338	-		SO3627	0.86	-1.4
3,787,338	-		SO3627	0.86	-0.8
3,787,338	-		SO3627	0.86	-1.4
3,787,338	-		SO3627	0.86	-1.1
3,787,360	-		SO3627	0.89	-2.0
3,787,372	-				+0.6
3,787,373	+				-1.3
3,787,373	+				-1.0
3,787,373	+				-0.1
3,787,373	+				+0.3
3,787,373	+				+0.5
3,787,373	+				-0.5
3,787,373	+				+0.7
3,787,373	+				-0.1
3,787,373	+				+2.7
3,787,373	+				-0.4
3,787,373	+				-0.1
3,787,373	+				-0.1
3,787,381	-				+0.8
3,787,381	-				+0.3
3,787,381	-				+1.1
3,787,381	-				+0.9
3,787,381	-				+1.7
3,787,381	-				-1.2
3,787,381	-				+1.7
3,787,381	-				-0.6
3,787,381	-				-0.9
3,787,381	-				+0.5
3,787,381	-				-0.5
3,787,381	-				+0.7
3,787,419	+				+0.5
3,787,427	-				-1.7
3,787,427	-				+0.2
3,787,473	+				-1.8
3,787,476	-				-0.1
3,787,481	-				-1.6
3,787,484	-				-1.4
3,787,500	+				-1.5
3,787,500	+				-1.2
3,787,500	+				-1.1
3,787,503	-				-2.5
3,787,508	-				+1.7
3,787,508	-				+0.4
3,787,508	-				+0.5
3,787,508	-				+1.7
3,787,515	+				-0.2
3,787,519	-				-0.9
3,787,539	-		SO_3628	0.13	-0.5
3,787,539	-		SO_3628	0.13	-1.8
3,787,544	+		SO_3628	0.14	-1.1
3,787,544	+		SO_3628	0.14	-0.3
3,787,555	+		SO_3628	0.18	+2.5
3,787,567	+		SO_3628	0.21	-1.1
3,787,567	+		SO_3628	0.21	+0.2
3,787,567	+		SO_3628	0.21	+1.0
3,787,567	+		SO_3628	0.21	-0.9
3,787,567	+		SO_3628	0.21	+2.3
3,787,567	+		SO_3628	0.21	-0.3
3,787,567	+		SO_3628	0.21	+2.6
3,787,567	+		SO_3628	0.21	-1.3
3,787,567	+		SO_3628	0.21	-0.4
3,787,575	-		SO_3628	0.24	+1.1
3,787,575	-		SO_3628	0.24	+0.1
3,787,575	-		SO_3628	0.24	-0.7
3,787,575	-		SO_3628	0.24	-1.0
3,787,575	-		SO_3628	0.24	-0.5
3,787,594	+		SO_3628	0.29	+1.1
3,787,594	+		SO_3628	0.29	+1.7
3,787,594	+		SO_3628	0.29	+0.4
3,787,599	+		SO_3628	0.31	+0.3
3,787,599	+		SO_3628	0.31	+1.1
3,787,602	-		SO_3628	0.32	-1.5
3,787,602	-		SO_3628	0.32	+1.7
3,787,602	-		SO_3628	0.32	+1.4
3,787,602	-		SO_3628	0.32	+0.5
3,787,604	+		SO_3628	0.32	+0.7
3,787,607	-		SO_3628	0.33	+3.5
3,787,629	-		SO_3628	0.40	-1.3
3,787,675	+		SO_3628	0.54	-0.5
3,787,709	+		SO_3628	0.64	+0.7
3,787,718	+		SO_3628	0.67	+2.0
3,787,718	+		SO_3628	0.67	+1.2
3,787,718	+		SO_3628	0.67	+0.0
3,787,768	+		SO_3628	0.82	-0.3
3,787,768	+		SO_3628	0.82	-1.7
3,787,776	-		SO_3628	0.85	+0.8
3,787,777	-		SO_3628	0.85	+0.5
3,787,783	+		SO_3628	0.87	+0.3
3,787,800	+				-0.2
3,787,808	-				-0.3
3,787,813	+				-1.0
3,787,813	+				-1.6
3,787,828	+				+0.7
3,787,828	+				-0.4
3,787,828	+				+0.1
3,787,828	+				+0.4
3,787,828	+				+0.6
3,787,828	+				+0.0
3,787,828	+				+2.1
3,787,828	+				-2.0
3,787,828	+				-0.6
3,787,828	+				-1.0
3,787,828	+				+0.3
3,787,829	+				+0.3
3,787,836	-				-1.6
3,787,836	-				-1.9
3,787,836	-				+0.8
3,787,836	-				+0.9
3,787,836	-				-0.7
3,787,836	-				-1.2
3,787,836	-				-2.9
3,787,836	-				+0.8
3,787,836	-				-0.5
3,787,836	-				+0.7
3,787,838	+				-0.5
3,787,838	+				-0.5
3,787,838	+				-0.2
3,787,838	+				+0.0
3,787,838	+				+0.1
3,787,838	+				+0.5
3,787,838	+				+0.5
3,787,838	+				-0.2
3,787,838	+				-0.4
3,787,846	-				+0.1
3,787,846	-				+2.5
3,787,846	-				-0.5
3,787,846	-				-2.7
3,787,846	-				+0.1
3,787,862	+				+1.1
3,787,882	-				-1.1
3,787,896	+				-1.7
3,787,904	-				-0.7
3,787,904	-				+0.5
3,787,932	-				-0.5
3,787,953	+				+0.8
3,787,962	+				-0.7
3,787,962	+				-0.3
3,787,962	+				-1.0
3,787,962	+				+0.3
3,787,962	+				+0.5
3,787,962	+				+0.6
3,787,962	-				-0.2
3,787,970	-				-0.6
3,787,970	-				-1.7
3,787,970	-				-0.4
3,788,035	-				+0.6
3,788,074	+				-0.6
3,788,074	+				+0.2
3,788,083	+				+0.3
3,788,083	+				-0.5
3,788,083	+				-0.6
3,788,083	+				-0.9
3,788,091	-				-0.7
3,788,091	-				-1.3
3,788,117	+				+0.1
3,788,117	+				+0.3
3,788,117	+				-0.5
3,788,117	+				-0.0
3,788,117	-				+1.7
3,788,125	-				-0.7
3,788,125	-				-0.6
3,788,125	-				-0.6
3,788,125	-				-0.6
3,788,125	-				-0.4
3,788,125	-				+1.1
3,788,125	-				+0.4
3,788,125	-				-2.6
3,788,125	-				-0.9
3,788,125	-				+0.6
3,788,153	+				+0.7
3,788,160	-				-0.9
3,788,178	+				+1.1
3,788,178	+				+0.6
3,788,183	+				-1.5
3,788,183	+				+1.7
3,788,183	+				+0.1
3,788,183	+				-0.4
3,788,188	+				-0.6
3,788,191	-				-1.0
3,788,191	-				-0.7
3,788,191	-				-1.0
3,788,191	-				-0.9
3,788,194	-				+0.6
3,788,194	-				-0.0
3,788,202	+				-2.4
3,788,202	+				-0.1
3,788,202	+				+0.5
3,788,202	+				+0.3
3,788,210	-				+0.1
3,788,222	+				-1.6
3,788,229	-				-2.3
3,788,240	+				+0.3
3,788,240	+				+0.2
3,788,240	+				-0.1
3,788,247	+				-0.4
3,788,252	+				+0.8
3,788,252	+				+1.0
3,788,260	-				+0.0
3,788,260	-				-0.4
3,788,296	+				+0.4
3,788,297	+				-2.1
3,788,303	-		SO3629	0.11	-0.3
3,788,306	+		SO3629	0.12	-1.1
3,788,361	-		SO3629	0.25	-0.9
3,788,361	-		SO3629	0.25	+0.8
3,788,376	+		SO3629	0.28	-0.7
3,788,376	+		SO3629	0.28	+1.5
3,788,420	+		SO3629	0.39	+0.6
3,788,427	+		SO3629	0.40	-1.7
3,788,429	-		SO3629	0.41	-1.1
3,788,435	-		SO3629	0.42	-0.8
3,788,474	+		SO3629	0.51	+0.8
3,788,474	-		SO3629	0.51	-0.3
3,788,474	-		SO3629	0.51	-0.1
3,788,482	+		SO3629	0.53	+0.6
3,788,495	+		SO3629	0.56	-1.0
3,788,501	-		SO3629	0.58	+2.7
3,788,501	-		SO3629	0.58	-0.8
3,788,525	+		SO3629	0.63	-0.5
3,788,525	+		SO3629	0.63	+0.5
3,788,526	+		SO3629	0.64	+0.4
3,788,526	+		SO3629	0.64	+0.9
3,788,533	-		SO3629	0.65	+0.3
3,788,534	+		SO3629	0.65	+0.6
3,788,534	+		SO3629	0.65	-0.5
3,788,534	+		SO3629	0.65	-2.0
3,788,534	-		SO3629	0.65	+0.1
3,788,534	-		SO3629	0.65	+1.3
3,788,534	-		SO3629	0.65	+1.7
3,788,542	-		SO3629	0.67	-0.0
3,788,544	+		SO3629	0.68	-0.3
3,788,620	+		SO3629	0.86	+1.0
3,788,620	+		SO3629	0.86	+0.2
3,788,620	+		SO3629	0.86	-1.3
3,788,620	+		SO3629	0.86	+0.2
3,788,620	+		SO3629	0.86	-0.3
3,788,623	-		SO3629	0.87	-1.0
3,788,628	-		SO3629	0.88	-1.1
3,788,630	+		SO3629	0.88	+0.8
3,788,630	+		SO3629	0.88	+0.8
3,788,630	+		SO3629	0.88	-1.9
3,788,630	+		SO3629	0.88	+0.8
3,788,630	+		SO3629	0.88	-0.7
3,788,630	+		SO3629	0.88	-0.0
3,788,630	+		SO3629	0.88	-1.2
3,788,630	+		SO3629	0.88	+1.0
3,788,630	+		SO3629	0.88	+1.5
3,788,630	+		SO3629	0.88	+0.2
3,788,630	+		SO3629	0.88	+1.6
3,788,630	+		SO3629	0.88	+1.1
3,788,638	-				-2.2
3,788,638	-				-1.1
3,788,638	-				-0.1
3,788,638	-				+1.3
3,788,638	-				-2.2
3,788,638	-				-0.3
3,788,638	-				+0.4
3,788,638	-				-0.5
3,788,638	-				+2.3
3,788,638	-				-1.3
3,788,638	-				+0.4
3,788,638	-				+0.5
3,788,638	-				-0.0
3,788,638	-				+0.4
3,788,638	-				+0.5
3,788,638	-				-0.6
3,788,638	-				+1.4
3,788,638	-				-0.7
3,788,638	-				-1.4
3,788,638	-				+0.3
3,788,639	-				-2.1
3,788,652	-				+0.2
3,788,662	-				-0.4
3,788,680	-				+0.8
3,788,693	+				-1.3
3,788,699	+				+0.4
3,788,699	+				+0.4
3,788,700	+				+0.3
3,788,707	-				-0.1
3,788,708	-				+2.0
3,788,708	-				+0.6
3,788,731	-				-1.5
3,788,761	-				-0.7
3,788,774	-				+2.3
3,788,778	+				-1.3
3,788,815	+				-0.7
3,788,823	-				-0.9
3,788,823	-				-1.0