Strain Fitness in Shewanella oneidensis MR-1 around SO_2786

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,908,519	-	rne	SO2785	0.75	+0.4
2,908,522	+	rne	SO2785	0.75	-0.2
2,908,591	+	rne	SO2785	0.77	+2.0
2,908,597	+	rne	SO2785	0.77	-0.3
2,908,602	+	rne	SO2785	0.77	+2.0
2,908,610	-	rne	SO2785	0.78	+3.0
2,908,610	-	rne	SO2785	0.78	-0.6
2,908,648	+	rne	SO2785	0.79	-1.4
2,908,656	-	rne	SO2785	0.79	+3.0
2,908,739	+	rne	SO2785	0.82	+1.0
2,908,810	-	rne	SO2785	0.84	+2.0
2,908,942	+	rne	SO2785	0.88	-0.8
2,908,950	-	rne	SO2785	0.88	-0.0
2,909,073	+				+1.2
2,909,144	-				+0.1
2,909,146	+				+2.0
2,909,154	-				+3.0
2,909,497	+		SO_2786	0.15	+1.6
2,909,519	+		SO_2786	0.26	+2.3
2,909,550	-		SO_2786	0.40	+0.3
2,909,596	+		SO_2786	0.62	-0.4
2,910,360	-				+1.5
2,910,531	-	rrmA	SO2788	0.20	-1.9