Strain Fitness in Shewanella oneidensis MR-1 around SO_1620

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,701,572	-		SO1618	0.55	+1.2
1,701,889	+		SO1618	0.87	+0.4
1,701,946	-				-2.3
1,701,946	-				-1.4
1,701,958	+				-0.4
1,702,081	-				+0.8
1,702,081	-				-0.9
1,702,129	+				-0.5
1,702,129	+				-0.1
1,702,137	-				-0.7
1,702,198	-				-1.0
1,702,268	+		SO1619	0.31	+0.2
1,702,362	+		SO1619	0.60	+1.1
1,702,362	+		SO1619	0.60	+0.3
1,702,362	+		SO1619	0.60	+0.7
1,702,370	-		SO1619	0.63	+1.5
1,702,512	+				+2.3
1,702,553	+				+0.0
1,702,599	+		SO_1620	0.15	+0.5
1,702,827	-		SO_1620	0.42	-0.1
1,702,889	-		SO_1620	0.49	-0.2
1,702,889	-		SO_1620	0.49	-2.3
1,702,911	+		SO_1620	0.52	+1.5
1,703,180	+		SO_1620	0.84	+2.4
1,703,187	+		SO_1620	0.85	+1.0
1,703,195	-		SO_1620	0.86	-2.3
1,703,308	+				-0.9
1,703,316	-				+0.4
1,703,316	-				-2.0
1,703,320	+				-1.1
1,703,327	+				+0.9
1,703,327	+				+0.8
1,703,397	+				+1.8
1,703,471	-				+0.3
1,703,587	-				-0.0
1,703,634	+				+1.4
1,703,730	+				-0.8
1,703,730	+				+2.4
1,703,730	+				-0.9
1,703,730	+				+2.8
1,703,730	+				-2.4
1,703,730	+				-0.5
1,703,738	-				+2.1
1,703,738	-				+1.0
1,703,738	-				-0.6
1,703,738	-				-0.1
1,703,738	-				+0.8
1,703,738	-				-0.2
1,703,738	-				-1.4
1,703,738	-				+0.5
1,703,738	-				-0.5
1,703,754	+		SO1622	0.12	-1.2
1,703,877	+		SO1622	0.38	+0.9
1,703,939	+		SO1622	0.51	+0.5
1,703,954	+		SO1622	0.55	+0.3
1,704,050	+		SO1622	0.75	+0.5
1,704,148	-				-0.5