Strain Fitness in Shewanella oneidensis MR-1 around SO3142.3

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,279,082	-		SO_3143	0.36	-2.2
3,279,148	+		SO_3143	0.45	-1.2
3,279,248	-		SO_3143	0.59	-0.2
3,279,323	+		SO_3143	0.70	+1.3
3,279,340	+		SO_3143	0.72	+1.4
3,279,356	+		SO_3143	0.74	+0.7
3,279,361	-		SO_3143	0.75	+0.4
3,279,366	+		SO_3143	0.76	-0.3
3,279,366	+		SO_3143	0.76	+1.1
3,279,366	+		SO_3143	0.76	-0.7
3,279,369	-		SO_3143	0.76	+0.1
3,279,374	-		SO_3143	0.77	+0.6
3,279,374	-		SO_3143	0.77	+1.4
3,279,374	-		SO_3143	0.77	+0.1
3,279,374	-		SO_3143	0.77	-2.5
3,279,383	-		SO_3143	0.78	-0.3
3,279,393	+		SO_3143	0.79	+1.0
3,279,405	-		SO_3143	0.81	-0.0
3,279,410	-		SO_3143	0.82	+2.0
3,279,518	+				+0.9
3,279,518	+				+1.2
3,279,526	-				-0.3
3,279,526	-				+0.2
3,279,526	-				+1.7
3,279,586	+		SO3142.2	0.12	-1.8
3,279,607	+		SO3142.2	0.17	-0.5
3,279,638	+		SO3142.2	0.24	+0.4
3,279,638	+		SO3142.2	0.24	+0.7
3,279,638	+		SO3142.2	0.24	+2.5
3,279,646	-		SO3142.2	0.26	+1.2
3,279,812	-		SO3142.2	0.66	+0.6
3,279,819	-		SO3142.2	0.67	+4.0
3,279,880	-		SO3142.2	0.82	-0.3
3,279,950	+				+0.0
3,280,102	-		SO3142.3	0.23	+1.9
3,280,223	+		SO3142.3	0.56	+1.8
3,280,223	+		SO3142.3	0.56	-0.6
3,280,231	-		SO3142.3	0.59	+1.6
3,280,250	+		SO3142.3	0.64	-0.2
3,280,368	+				+0.9
3,280,414	+				+0.4
3,280,473	-				+1.1
3,280,475	+				+1.7
3,280,477	+				+1.0
3,280,520	+				-0.4
3,280,539	-				+0.5
3,280,679	-				-1.1
3,280,704	-				+1.4
3,280,706	-				-0.4
3,280,881	-	etfA	SO3144	0.14	-0.0
3,280,898	-	etfA	SO3144	0.16	-3.7
3,281,114	+	etfA	SO3144	0.39	-2.4
3,281,117	-	etfA	SO3144	0.39	-0.1
3,281,117	-				-0.3
3,281,195	-	etfA	SO3144	0.48	-0.8
3,281,242	+	etfA	SO3144	0.53	-0.5
3,281,315	-	etfA	SO3144	0.61	-0.2
3,281,322	+	etfA	SO3144	0.61	-1.1