Strain Fitness in Shewanella oneidensis MR-1 around SOA0130

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
113,499	-				-0.2
113,536	+				+0.7
113,597	-				+0.7
113,651	+				+1.0
113,663	+				-0.0
113,663	-				-2.0
113,671	-				-0.8
113,671	-				-0.0
113,698	+				-0.7
113,699	-				-0.5
113,754	+				-1.1
113,767	+				+0.1
113,770	-				-1.4
113,812	+				+0.6
113,818	+				-0.2
113,823	+				+1.3
113,830	-				-0.7
113,847	-				-0.5
113,944	-				+3.0
113,969	-				+0.8
113,971	+				+1.3
113,974	+				-1.4
113,979	-				-0.7
113,979	-				+0.8
114,009	+				+0.9
114,026	+				+0.6
114,063	+				+1.4
114,071	+				+1.7
114,073	+				-0.1
114,075	+				-0.8
114,079	-				+0.0
114,094	-				-0.1
114,096	+				+0.9
114,096	+				+0.4
114,096	+				-0.7
114,141	-				-0.3
114,143	+				+0.1
114,198	+				+3.7
114,198	+				-1.2
114,223	+				+1.0
114,223	+				+0.3
114,223	+				+0.6
114,223	+				-1.4
114,223	+				+0.1
114,223	+				-1.3
114,223	+				-3.2
114,223	+				-0.0
114,223	+				-3.1
114,223	+				+0.8
114,223	+				+0.7
114,223	+				+1.1
114,231	-				+0.8
114,231	-				-1.5
114,231	-				-0.6
114,231	-				+0.1
114,231	-				+1.5
114,231	-				-2.0
114,238	+				+0.3
114,255	+				-1.0
114,255	+				-1.4
114,255	+				-1.3
114,256	+				+0.8
114,256	+				-1.5
114,256	+				-0.1
114,263	-				+0.8
114,263	-				+0.4
114,263	-				+1.7
114,263	-				+0.2
114,263	-				-0.9
114,263	-				+0.8
114,263	-				-2.1
114,263	-				-0.4
114,263	-				+0.6
114,263	-				-0.0
114,263	-				-1.1
114,264	-				+0.3
114,290	+				-0.9
114,290	+				+1.2
114,290	+				+1.4
114,298	-				-1.0
114,298	-				-0.5
114,298	-				+1.8
114,310	-				+0.9
114,310	-				-0.7
114,310	-				-0.2
114,310	-				-0.1
114,351	-				+0.3
114,351	-				-1.9
114,363	-				-0.6
114,439	+				-1.0
114,449	+				-0.9
114,451	+				+0.5
115,103	+		SOA0130	0.51	-1.8
115,737	+				-2.1
115,747	+				-1.9
115,747	+				-1.7
115,749	+				-0.1
115,761	-				-0.4
115,775	+				+1.1
115,777	+				-0.1
115,777	+				-0.8
115,777	+				-0.5
115,777	+				-1.1
115,777	+				-2.0
115,777	+				+0.8
115,777	+				+2.8
115,777	+				+0.7
115,777	+				+1.7
115,777	+				+0.6
115,777	+				+0.2
115,777	+				+1.1
115,777	+				+0.0
115,777	+				-1.1
115,777	+				+0.6
115,780	-				+0.4
115,785	-				-1.2
115,785	-				+2.3
115,785	-				+1.2
115,785	-				+1.0
115,785	-				+0.3
115,785	-				+1.9
115,785	-				-0.7
115,785	-				-0.1
115,785	-				+1.0
115,785	-				-2.2
115,785	-				-0.5
115,785	-				+0.6
115,785	-				-2.7
115,785	-				+0.3
115,785	-				-0.9
115,785	-				+3.0
115,785	-				+0.8
115,785	-				+0.8
115,785	-				+0.9
115,787	+				-1.2
115,787	+				+2.2
115,787	+				+0.3
115,787	+				-0.2
115,787	+				-0.4
115,787	+				+0.3
115,787	+				+0.8
115,787	+				+0.2
115,787	+				+0.5
115,787	+				+0.6
115,787	+				-0.8
115,787	+				+1.0
115,787	+				+0.8
115,787	+				+0.3
115,787	+				-3.7
115,787	+				-2.2
115,787	+				+0.9
115,787	+				+0.4
115,787	+				+1.5
115,787	+				-0.0
115,787	+				-0.2
115,787	+				-2.1
115,787	+				+0.1
115,787	+				+0.5
115,787	+				+0.3
115,787	+				-0.4
115,787	+				-0.3
115,787	+				-0.5
115,787	+				-0.5
115,787	+				-0.2
115,787	+				+1.1
115,787	+				+1.2
115,787	+				+0.3
115,787	+				+0.7
115,787	+				+1.3
115,787	+				-0.4
115,787	+				-2.2
115,787	+				-2.1
115,787	+				+1.1
115,787	+				+0.9
115,787	+				-0.1
115,787	+				+1.1
115,787	+				-1.6
115,787	+				-0.2
115,789	+				+0.0
115,795	-				-1.8
115,795	-				-0.8
115,795	-				-2.7
115,795	-				-2.1
115,795	-				-1.1
115,795	-				+1.1
115,795	-				+1.8
115,795	-				+1.3
115,795	-				-1.5
115,795	-				+0.4
115,795	-				+1.2
115,795	-				+1.2
115,795	-				+1.6
115,795	-				+0.9
115,795	-				-1.2
115,795	-				-0.1
115,795	-				+0.8
115,795	-				-0.2
115,795	-				-1.2
115,795	-				-0.2
115,795	-				+0.3
115,795	-				-1.3
115,795	-				+0.3
115,795	-				+1.2
115,795	-				+0.1
115,795	-				+0.9
115,795	-				-0.1
115,795	-				+0.1
115,795	-				-1.3
115,795	-				+0.2
115,795	-				+1.2
115,795	-				-1.9
115,795	-				-0.5
115,795	-				+0.5
115,795	-				+0.0
115,795	-				-3.2
115,795	-				-0.5
115,795	-				-0.3
115,795	-				-0.2
115,795	-				+0.7
115,795	-				-0.5
115,795	-				-0.1
115,795	-				-1.3
115,795	-				-0.2
115,795	-				+1.0
115,795	-				-0.4
115,795	-				+1.7
115,797	+				-1.7
115,797	-				+1.0
115,799	-				-1.4
115,805	-				+0.5
115,820	+				+0.3
115,821	-				+3.4
115,828	+				+0.6
115,828	-				+0.1
115,831	+				+0.5
115,833	+				-1.0
115,833	+				+0.7
115,833	+				+0.4
115,833	+				+1.5
115,834	-				+0.1
115,836	-				-0.9
115,836	-				+1.5
115,836	-				-2.5
115,841	-				-2.3
115,848	+				-0.3
115,860	+				-0.2
115,870	+				-0.1
115,878	-				+1.4
115,878	-				+1.9
115,878	-				+0.5
115,878	-				-1.6
115,880	+				-1.2
115,886	-				-3.1
115,887	-				-1.0
115,891	+				+0.8
115,896	+				+1.0
115,896	+				+0.1
115,896	+				-0.5
115,896	+				+0.4
115,896	+				-0.4
115,896	+				-0.3
115,896	+				-0.2
115,899	-				+2.4
115,901	+				-0.2
115,901	+				-1.7
115,901	+				+0.3
115,901	+				-0.5
115,901	+				+1.0
115,901	+				+1.2
115,901	+				-0.9
115,901	+				+1.0
115,901	+				+0.1
115,901	+				+0.4
115,901	+				+0.3
115,901	+				+0.8
115,904	-				-0.5
115,904	-				-1.4
115,904	-				+1.4
115,904	-				-0.7
115,904	-				+3.0
115,904	-				-0.5
115,909	-				+0.5
115,909	-				-0.5
115,909	-				+1.1
115,909	-				-1.6
115,909	-				+0.0
115,909	-				-1.9
115,909	-				-2.2
115,909	-				-0.6
115,909	-				+1.1
115,909	-				+0.8
115,909	-				-1.9
115,909	-				-0.8
115,909	-				+1.2
115,910	-				-0.2
115,936	+				-0.6
115,936	-				-1.4
115,959	+				-1.2
115,959	+				+0.1
115,959	+				+0.4
115,959	+				-1.2
115,959	+				+1.0
115,959	+				-1.1
115,966	+				+0.2
115,967	-				+0.9
115,967	-				-0.1
115,967	-				+0.6
115,967	-				-0.2
115,967	-				-2.8
115,967	-				-1.5
115,967	-				-0.8
115,967	-				-1.3
115,971	+				+0.9
115,971	+				+1.5
115,971	+				+0.6
115,971	+				+0.1
115,971	+				-0.6
115,971	+				-1.0
115,971	+				+0.0
115,971	+				-1.4
115,971	+				+1.2
115,971	+				+0.0
115,971	+				+0.8
115,971	+				+2.8
115,971	+				+0.7
115,971	+				+0.1
115,971	+				+0.5
115,971	+				+1.7
115,971	+				-0.4
115,971	+				-0.6
115,971	+				-0.0
115,971	+				+2.2
115,971	+				-1.5
115,971	-				+0.5
115,973	+				-0.5
115,979	-				+2.2
115,979	-				+0.0
115,979	-				-1.3
115,979	-				-0.5
115,979	-				-0.3
115,979	-				-1.4
115,979	-				+0.3
115,979	-				-1.6
115,979	-				-2.6
115,979	-				+0.2
115,979	-				+1.7
115,979	-				+0.1
115,979	-				-0.2
115,979	-				+0.2
115,979	-				-0.0
115,979	-				+0.4
115,979	-				-2.7
115,979	-				-0.1
116,006	+				+1.8
116,014	-				-1.1
116,035	-				-0.2
116,064	+				-0.8
116,064	+				-2.1
116,064	+				-1.0
116,064	+				-0.8
116,064	+				+1.6
116,064	+				+0.1
116,064	+				-0.1
116,064	+				+1.1
116,064	+				+1.0
116,064	+				-0.7
116,064	+				-0.5
116,064	+				+1.3
116,064	+				-1.0
116,064	+				-0.7
116,064	+				-0.0
116,069	+				+0.7
116,069	+				-0.9
116,069	+				+1.5
116,072	-				+0.1
116,072	-				+1.4
116,072	-				-1.3
116,072	-				-2.5
116,072	-				+1.6
116,072	-				-0.1
116,072	-				-1.6
116,072	-				-0.9
116,072	-				+1.0
116,072	-				-1.4
116,072	-				-0.5
116,072	-				-0.6
116,072	-				-0.9
116,072	-				-0.9
116,074	+				-0.5
116,074	+				-0.1
116,077	-				+1.5
116,082	-				-0.3
116,085	+				+1.0
116,086	+				-1.1
116,086	+				+1.5
116,087	-				+0.0
116,093	-				-0.2
116,093	-				+0.9
116,093	-				-3.5
116,093	-				+1.5
116,093	-				+1.6
116,093	-				-1.8
116,094	-				+0.0
116,094	-				-0.2
116,094	-				-1.1
116,142	+				-0.6
116,142	-				+1.4
116,144	+				-0.3
116,144	+				+0.8
116,144	+				-1.3
116,147	-				+0.1
116,149	-		SO_A0131	0.10	+0.8
116,150	+		SO_A0131	0.10	-1.9
116,150	-		SO_A0131	0.10	-0.8
116,152	-		SO_A0131	0.11	+0.6
116,152	-		SO_A0131	0.11	+0.6
116,152	-		SO_A0131	0.11	-0.2
116,152	-		SO_A0131	0.11	-1.8
116,182	-		SO_A0131	0.18	-0.7
116,208	+		SO_A0131	0.24	-1.3
116,208	+		SO_A0131	0.24	-0.7
116,208	+		SO_A0131	0.24	+1.0
116,215	-		SO_A0131	0.26	-2.2
116,302	+		SO_A0131	0.47	-0.0
116,303	+		SO_A0131	0.47	-0.0
116,304	-		SO_A0131	0.48	+0.5
116,310	-		SO_A0131	0.49	+0.9
116,311	-		SO_A0131	0.49	-0.1
116,311	-		SO_A0131	0.49	-0.9
116,316	-		SO_A0131	0.51	-0.1
116,328	+		SO_A0131	0.54	+0.9
116,335	+		SO_A0131	0.55	-1.5
116,335	+		SO_A0131	0.55	+1.2
116,341	+		SO_A0131	0.57	-0.1
116,342	+		SO_A0131	0.57	-0.6
116,342	+		SO_A0131	0.57	+0.4
116,342	+		SO_A0131	0.57	-2.3
116,342	+		SO_A0131	0.57	-1.5
116,350	-		SO_A0131	0.59	-2.1
116,352	-		SO_A0131	0.59	+1.3
116,352	-		SO_A0131	0.59	-0.4
116,357	-		SO_A0131	0.61	-0.7
116,362	-		SO_A0131	0.62	+0.5
116,374	-		SO_A0131	0.65	+2.5
116,376	-		SO_A0131	0.65	-1.3
116,376	-		SO_A0131	0.65	-1.8
116,381	-		SO_A0131	0.66	+0.9
116,418	+		SO_A0131	0.75	+0.3
116,418	+		SO_A0131	0.75	+0.2
116,418	+		SO_A0131	0.75	-0.2
116,426	+		SO_A0131	0.77	-3.2
116,426	-		SO_A0131	0.77	+0.4
116,449	+		SO_A0131	0.83	-0.8
116,455	+		SO_A0131	0.84	-1.2
116,455	+		SO_A0131	0.84	-0.3
116,455	+		SO_A0131	0.84	+1.3
116,455	+		SO_A0131	0.84	-2.4
116,455	+		SO_A0131	0.84	+0.5
116,458	-		SO_A0131	0.85	+0.7
116,462	+		SO_A0131	0.86	+0.4
116,463	+		SO_A0131	0.86	-0.0
116,463	-		SO_A0131	0.86	-1.4
116,463	-		SO_A0131	0.86	+0.2
116,471	-		SO_A0131	0.88	+0.9
116,471	-		SO_A0131	0.88	-1.0
116,486	+				+0.7
116,486	+				-0.7
116,486	+				+0.7
116,494	-				-2.9
116,494	-				-1.9
116,494	-				+1.3
116,494	-				+1.0
116,494	-				-0.1
116,494	-				+0.7
116,541	+				+1.4
116,541	+				-0.4
116,541	+				+0.2
116,541	+				+1.5
116,541	+				-0.6
116,549	-				-0.5
116,549	-				+1.0
116,565	+		SOA0132	0.11	+1.1
116,567	-		SOA0132	0.11	+1.8
116,570	+		SOA0132	0.12	+0.2
116,573	-		SOA0132	0.13	+0.0
116,578	+		SOA0132	0.14	-1.1
116,578	-		SOA0132	0.14	-1.1
116,586	-		SOA0132	0.15	-0.2
116,591	+		SOA0132	0.17	+0.0
116,591	+		SOA0132	0.17	+0.5
116,612	-		SOA0132	0.21	+0.8
116,614	+		SOA0132	0.22	-1.4
116,637	+		SOA0132	0.27	+0.5
116,641	-		SOA0132	0.27	+0.2
116,647	+		SOA0132	0.29	+0.8
116,647	+		SOA0132	0.29	-2.1
116,647	+		SOA0132	0.29	+1.5
116,647	+		SOA0132	0.29	-1.1
116,647	+		SOA0132	0.29	-1.2
116,647	+		SOA0132	0.29	-2.0
116,647	+		SOA0132	0.29	+2.6
116,647	+		SOA0132	0.29	-0.5
116,647	+		SOA0132	0.29	+1.1
116,647	+		SOA0132	0.29	+1.8
116,647	+		SOA0132	0.29	-0.1
116,647	+		SOA0132	0.29	+0.6
116,647	+		SOA0132	0.29	-2.5
116,647	+		SOA0132	0.29	-0.3
116,647	+		SOA0132	0.29	+1.2
116,647	+		SOA0132	0.29	-0.3
116,647	+		SOA0132	0.29	-0.5
116,647	+		SOA0132	0.29	-0.4
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	-1.6
116,647	+		SOA0132	0.29	+1.0
116,647	+		SOA0132	0.29	-0.0
116,647	+		SOA0132	0.29	+1.6
116,647	+		SOA0132	0.29	-0.1
116,647	+		SOA0132	0.29	+0.9
116,647	+		SOA0132	0.29	-1.5
116,647	+		SOA0132	0.29	-0.2
116,647	+		SOA0132	0.29	-0.5
116,647	+		SOA0132	0.29	+0.4
116,647	+		SOA0132	0.29	+0.3
116,647	+		SOA0132	0.29	-1.3
116,647	+		SOA0132	0.29	-1.2
116,647	+		SOA0132	0.29	+0.5
116,647	+		SOA0132	0.29	+1.2
116,647	+		SOA0132	0.29	+0.2
116,647	+		SOA0132	0.29	-0.5
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	-1.4
116,647	+		SOA0132	0.29	-0.7
116,647	+		SOA0132	0.29	+0.1
116,647	+		SOA0132	0.29	+2.6
116,647	+		SOA0132	0.29	+1.1
116,655	-		SOA0132	0.31	+3.1
116,655	-		SOA0132	0.31	-0.7
116,655	-		SOA0132	0.31	-0.4
116,655	-		SOA0132	0.31	-1.5
116,655	-		SOA0132	0.31	+0.3
116,655	-		SOA0132	0.31	-0.1
116,655	-		SOA0132	0.31	+1.0
116,655	-		SOA0132	0.31	-0.3
116,655	-		SOA0132	0.31	-0.0
116,655	-		SOA0132	0.31	-1.4
116,655	-		SOA0132	0.31	-3.9
116,655	-		SOA0132	0.31	-0.0
116,655	-		SOA0132	0.31	+2.8
116,655	-		SOA0132	0.31	-0.9
116,655	-		SOA0132	0.31	-1.1
116,655	-		SOA0132	0.31	-2.0
116,655	-		SOA0132	0.31	-1.1
116,655	-		SOA0132	0.31	-0.6
116,655	-		SOA0132	0.31	-0.6
116,655	-		SOA0132	0.31	-1.1
116,655	-		SOA0132	0.31	-0.1
116,655	-		SOA0132	0.31	+0.1
116,655	-		SOA0132	0.31	-0.5
116,655	-		SOA0132	0.31	-0.6
116,655	-		SOA0132	0.31	+0.1
116,655	-		SOA0132	0.31	+0.5
116,655	-		SOA0132	0.31	+0.8
116,655	-		SOA0132	0.31	-0.5
116,655	-		SOA0132	0.31	-0.4
116,655	-		SOA0132	0.31	+0.0
116,655	-		SOA0132	0.31	-0.2
116,655	-		SOA0132	0.31	+2.3
116,655	-		SOA0132	0.31	-1.0
116,655	-		SOA0132	0.31	-0.2
116,655	-		SOA0132	0.31	-0.1
116,655	-		SOA0132	0.31	+2.1
116,655	-		SOA0132	0.31	-1.4