Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4696 and gst are separated by 202 nucleotides gst and SO4698 are separated by 12 nucleotides SO4698 and prlC are separated by 136 nucleotides
SO4696: SO4696 - hypothetical 3-methyladenine DNA glycosylase (NCBI ptt file), at 4,897,607 to 4,898,296
SO4696
SO4697: gst - glutathione S-transferase (NCBI ptt file), at 4,898,499 to 4,899,146
gst
SO4698: SO4698 - conserved hypothetical protein (NCBI ptt file), at 4,899,159 to 4,899,689
SO4698
SO4699: prlC - oligopeptidase A (NCBI ptt file), at 4,899,826 to 4,901,865
prlC
Position (kb)
4898
4899
4900 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4897.646 kb on + strand at 4897.706 kb on - strand, within SO4696 at 4897.743 kb on + strand, within SO4696 at 4897.866 kb on - strand, within SO4696 at 4897.942 kb on + strand, within SO4696 at 4898.032 kb on + strand, within SO4696 at 4898.032 kb on + strand, within SO4696 at 4898.040 kb on - strand, within SO4696 at 4898.040 kb on - strand, within SO4696 at 4898.040 kb on - strand, within SO4696 at 4898.040 kb on - strand, within SO4696 at 4898.040 kb on - strand, within SO4696 at 4898.154 kb on + strand, within SO4696 at 4898.154 kb on + strand, within SO4696 at 4898.154 kb on + strand, within SO4696 at 4898.167 kb on - strand, within SO4696 at 4898.197 kb on + strand, within SO4696 at 4898.262 kb on + strand at 4898.280 kb on + strand at 4898.300 kb on + strand at 4898.300 kb on - strand at 4898.302 kb on + strand at 4898.339 kb on + strand at 4898.399 kb on - strand at 4898.487 kb on + strand at 4898.489 kb on + strand at 4898.497 kb on - strand at 4898.502 kb on - strand at 4898.592 kb on + strand, within gst at 4898.595 kb on - strand, within gst at 4898.600 kb on - strand, within gst at 4898.741 kb on + strand, within gst at 4898.742 kb on - strand, within gst at 4898.749 kb on - strand, within gst at 4898.765 kb on + strand, within gst at 4898.777 kb on + strand, within gst at 4898.864 kb on + strand, within gst at 4898.910 kb on + strand, within gst at 4898.964 kb on - strand, within gst at 4898.994 kb on + strand, within gst at 4898.997 kb on - strand, within gst at 4899.010 kb on + strand, within gst at 4899.156 kb on + strand at 4899.157 kb on + strand at 4899.183 kb on - strand at 4899.283 kb on + strand, within SO4698 at 4899.291 kb on + strand, within SO4698 at 4899.306 kb on + strand, within SO4698 at 4899.311 kb on + strand, within SO4698 at 4899.316 kb on + strand, within SO4698 at 4899.316 kb on + strand, within SO4698 at 4899.321 kb on + strand, within SO4698 at 4899.324 kb on - strand, within SO4698 at 4899.358 kb on - strand, within SO4698 at 4899.378 kb on + strand, within SO4698 at 4899.492 kb on - strand, within SO4698 at 4899.509 kb on + strand, within SO4698 at 4899.509 kb on + strand, within SO4698 at 4899.509 kb on + strand, within SO4698 at 4899.517 kb on - strand, within SO4698 at 4899.517 kb on - strand, within SO4698 at 4899.517 kb on - strand, within SO4698 at 4899.517 kb on - strand, within SO4698 at 4899.550 kb on + strand, within SO4698 at 4899.550 kb on + strand, within SO4698 at 4899.607 kb on - strand, within SO4698 at 4899.719 kb on + strand at 4899.719 kb on + strand at 4899.727 kb on - strand at 4899.727 kb on - strand at 4899.737 kb on - strand at 4899.785 kb on + strand at 4899.807 kb on + strand at 4899.831 kb on - strand at 4900.105 kb on + strand, within prlC at 4900.105 kb on + strand, within prlC at 4900.113 kb on - strand, within prlC at 4900.135 kb on + strand, within prlC
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,897,646 + -0.7 4,897,706 - SO4696 0.14 -0.7 4,897,743 + SO4696 0.20 +1.2 4,897,866 - SO4696 0.38 -0.4 4,897,942 + SO4696 0.49 +2.4 4,898,032 + SO4696 0.62 +0.3 4,898,032 + SO4696 0.62 -0.2 4,898,040 - SO4696 0.63 +1.1 4,898,040 - SO4696 0.63 +1.4 4,898,040 - SO4696 0.63 -0.4 4,898,040 - SO4696 0.63 +1.0 4,898,040 - SO4696 0.63 +0.3 4,898,154 + SO4696 0.79 -0.2 4,898,154 + SO4696 0.79 +1.0 4,898,154 + SO4696 0.79 -0.7 4,898,167 - SO4696 0.81 +1.3 4,898,197 + SO4696 0.86 -1.5 4,898,262 + +0.3 4,898,280 + +1.3 4,898,300 + -0.5 4,898,300 - +1.0 4,898,302 + +0.6 4,898,339 + -0.4 4,898,399 - -1.2 4,898,487 + -0.7 4,898,489 + +0.2 4,898,497 - -0.8 4,898,502 - +2.7 4,898,592 + gst SO4697 0.14 +0.0 4,898,595 - gst SO4697 0.15 -0.1 4,898,600 - gst SO4697 0.16 +1.9 4,898,741 + gst SO4697 0.37 -0.4 4,898,742 - gst SO4697 0.38 -0.5 4,898,749 - gst SO4697 0.39 +0.3 4,898,765 + gst SO4697 0.41 +0.6 4,898,777 + gst SO4697 0.43 +1.3 4,898,864 + gst SO4697 0.56 +0.9 4,898,910 + gst SO4697 0.63 +0.0 4,898,964 - gst SO4697 0.72 +1.1 4,898,994 + gst SO4697 0.76 -0.4 4,898,997 - gst SO4697 0.77 +1.6 4,899,010 + gst SO4697 0.79 +1.9 4,899,156 + -0.1 4,899,157 + -1.1 4,899,183 - +1.0 4,899,283 + SO4698 0.23 -0.1 4,899,291 + SO4698 0.25 +0.4 4,899,306 + SO4698 0.28 -0.6 4,899,311 + SO4698 0.29 +0.9 4,899,316 + SO4698 0.30 -1.2 4,899,316 + SO4698 0.30 -2.1 4,899,321 + SO4698 0.31 +1.6 4,899,324 - SO4698 0.31 -1.4 4,899,358 - SO4698 0.37 -0.1 4,899,378 + SO4698 0.41 +1.4 4,899,492 - SO4698 0.63 +1.9 4,899,509 + SO4698 0.66 +1.4 4,899,509 + SO4698 0.66 -1.2 4,899,509 + SO4698 0.66 -0.6 4,899,517 - SO4698 0.67 -1.7 4,899,517 - SO4698 0.67 +1.7 4,899,517 - SO4698 0.67 +0.8 4,899,517 - SO4698 0.67 -1.1 4,899,550 + SO4698 0.74 -0.7 4,899,550 + SO4698 0.74 -0.3 4,899,607 - SO4698 0.84 -0.8 4,899,719 + +0.8 4,899,719 + -0.7 4,899,727 - -0.8 4,899,727 - -2.5 4,899,737 - -1.3 4,899,785 + +0.7 4,899,807 + -2.0 4,899,831 - +0.7 4,900,105 + prlC SO4699 0.14 -2.6 4,900,105 + prlC SO4699 0.14 -0.9 4,900,113 - prlC SO4699 0.14 +0.6 4,900,135 + prlC SO4699 0.15 -3.0
Or see this region's nucleotide sequence