Strain Fitness in Shewanella oneidensis MR-1 around SO4697

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,897,646	+				-0.7
4,897,706	-		SO4696	0.14	-0.7
4,897,743	+		SO4696	0.20	+1.2
4,897,866	-		SO4696	0.38	-0.4
4,897,942	+		SO4696	0.49	+2.4
4,898,032	+		SO4696	0.62	+0.3
4,898,032	+		SO4696	0.62	-0.2
4,898,040	-		SO4696	0.63	+1.1
4,898,040	-		SO4696	0.63	+1.4
4,898,040	-		SO4696	0.63	-0.4
4,898,040	-		SO4696	0.63	+1.0
4,898,040	-		SO4696	0.63	+0.3
4,898,154	+		SO4696	0.79	-0.2
4,898,154	+		SO4696	0.79	+1.0
4,898,154	+		SO4696	0.79	-0.7
4,898,167	-		SO4696	0.81	+1.3
4,898,197	+		SO4696	0.86	-1.5
4,898,262	+				+0.3
4,898,280	+				+1.3
4,898,300	+				-0.5
4,898,300	-				+1.0
4,898,302	+				+0.6
4,898,339	+				-0.4
4,898,399	-				-1.2
4,898,487	+				-0.7
4,898,489	+				+0.2
4,898,497	-				-0.8
4,898,502	-				+2.7
4,898,592	+	gst	SO4697	0.14	+0.0
4,898,595	-	gst	SO4697	0.15	-0.1
4,898,600	-	gst	SO4697	0.16	+1.9
4,898,741	+	gst	SO4697	0.37	-0.4
4,898,742	-	gst	SO4697	0.38	-0.5
4,898,749	-	gst	SO4697	0.39	+0.3
4,898,765	+	gst	SO4697	0.41	+0.6
4,898,777	+	gst	SO4697	0.43	+1.3
4,898,864	+	gst	SO4697	0.56	+0.9
4,898,910	+	gst	SO4697	0.63	+0.0
4,898,964	-	gst	SO4697	0.72	+1.1
4,898,994	+	gst	SO4697	0.76	-0.4
4,898,997	-	gst	SO4697	0.77	+1.6
4,899,010	+	gst	SO4697	0.79	+1.9
4,899,156	+				-0.1
4,899,157	+				-1.1
4,899,183	-				+1.0
4,899,283	+		SO4698	0.23	-0.1
4,899,291	+		SO4698	0.25	+0.4
4,899,306	+		SO4698	0.28	-0.6
4,899,311	+		SO4698	0.29	+0.9
4,899,316	+		SO4698	0.30	-1.2
4,899,316	+		SO4698	0.30	-2.1
4,899,321	+		SO4698	0.31	+1.6
4,899,324	-		SO4698	0.31	-1.4
4,899,358	-		SO4698	0.37	-0.1
4,899,378	+		SO4698	0.41	+1.4
4,899,492	-		SO4698	0.63	+1.9
4,899,509	+		SO4698	0.66	+1.4
4,899,509	+		SO4698	0.66	-1.2
4,899,509	+		SO4698	0.66	-0.6
4,899,517	-		SO4698	0.67	-1.7
4,899,517	-		SO4698	0.67	+1.7
4,899,517	-		SO4698	0.67	+0.8
4,899,517	-		SO4698	0.67	-1.1
4,899,550	+		SO4698	0.74	-0.7
4,899,550	+		SO4698	0.74	-0.3
4,899,607	-		SO4698	0.84	-0.8
4,899,719	+				+0.8
4,899,719	+				-0.7
4,899,727	-				-0.8
4,899,727	-				-2.5
4,899,737	-				-1.3
4,899,785	+				+0.7
4,899,807	+				-2.0
4,899,831	-				+0.7
4,900,105	+	prlC	SO4699	0.14	-2.6
4,900,105	+	prlC	SO4699	0.14	-0.9
4,900,113	-	prlC	SO4699	0.14	+0.6
4,900,135	+	prlC	SO4699	0.15	-3.0