Strain Fitness in Shewanella oneidensis MR-1 around SO4670

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,868,645	+				-0.3
4,868,645	+				-0.3
4,868,722	+				+1.5
4,868,730	-				-2.9
4,868,730	-				+1.6
4,869,195	-	elbB	SO4670	0.34	+1.3
4,869,305	+	elbB	SO4670	0.50	-1.7
4,869,399	-	elbB	SO4670	0.65	+1.0
4,869,447	+	elbB	SO4670	0.72	-2.5
4,869,489	+	elbB	SO4670	0.78	+0.9
4,869,501	+	elbB	SO4670	0.80	-0.1
4,869,507	-	elbB	SO4670	0.81	+0.6
4,869,574	-				-0.9
4,869,584	-				-1.7
4,869,610	-				+1.2
4,869,652	-				-0.9
4,869,658	-				-1.2
4,869,667	+				-1.1
4,869,669	-				+1.1
4,869,748	+				+0.5
4,869,838	+	glpG	SO4671	0.15	+2.8
4,869,877	+	glpG	SO4671	0.20	-0.0
4,869,882	+	glpG	SO4671	0.20	+0.0
4,869,890	-	glpG	SO4671	0.21	+0.3
4,869,890	-	glpG	SO4671	0.21	-1.2
4,869,913	-	glpG	SO4671	0.24	-0.7
4,869,938	-	glpG	SO4671	0.27	+0.6
4,869,949	+	glpG	SO4671	0.28	+2.8
4,869,968	+	glpG	SO4671	0.31	-1.2
4,869,986	-	glpG	SO4671	0.33	-1.2
4,869,986	-	glpG	SO4671	0.33	+0.3
4,869,998	-	glpG	SO4671	0.34	+1.5
4,870,119	-	glpG	SO4671	0.49	-0.5
4,870,191	+	glpG	SO4671	0.57	-3.1
4,870,202	+	glpG	SO4671	0.58	-0.2
4,870,218	+	glpG	SO4671	0.60	+2.5
4,870,342	+	glpG	SO4671	0.75	+1.4
4,870,342	+	glpG	SO4671	0.75	-0.3
4,870,350	-	glpG	SO4671	0.76	-1.7
4,870,488	+				-0.7
4,870,488	+				+0.7
4,870,496	-				-1.8
4,870,503	+				+0.9
4,870,508	+				-0.3
4,870,516	-				-3.0
4,870,544	-				+2.1
4,870,610	-	glpE	SO4672	0.20	+1.1