Strain Fitness in Shewanella oneidensis MR-1 around SO4663

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,861,072	-		SO4661	0.85	-1.2
4,861,072	-		SO4661	0.85	-0.3
4,861,072	-		SO4661	0.85	+0.5
4,861,072	-		SO4661	0.85	+1.1
4,861,072	-		SO4661	0.85	-1.6
4,861,072	-		SO4661	0.85	+0.0
4,861,072	-		SO4661	0.85	+0.4
4,861,072	-		SO4661	0.85	-0.9
4,861,072	-		SO4661	0.85	-0.1
4,861,072	-		SO4661	0.85	+0.5
4,861,072	-		SO4661	0.85	-1.3
4,861,072	-		SO4661	0.85	-0.8
4,861,072	-		SO4661	0.85	-0.8
4,861,093	+		SO4661	0.87	+1.4
4,861,170	+				-0.2
4,861,170	+				+1.1
4,861,178	+				-0.5
4,861,178	+				+0.1
4,861,178	+				-1.1
4,861,178	-				-1.3
4,861,251	+				-0.2
4,861,251	+				-1.5
4,861,251	+				-0.1
4,861,260	-				-0.5
4,861,267	+				+0.5
4,861,277	+				-1.2
4,861,277	+				-1.3
4,861,285	-				+0.1
4,861,285	-				+0.7
4,861,319	+				-0.3
4,861,319	+				-0.3
4,861,321	+				-1.7
4,861,327	-				-0.4
4,861,327	-				+0.5
4,861,352	-		SO4662	0.13	-0.6
4,861,364	-		SO4662	0.15	+2.6
4,861,399	+		SO4662	0.21	-0.4
4,861,407	-		SO4662	0.23	-1.9
4,861,407	-		SO4662	0.23	-3.1
4,861,421	-		SO4662	0.25	-3.2
4,861,439	+		SO4662	0.28	-1.8
4,861,444	+		SO4662	0.29	+1.3
4,861,444	+		SO4662	0.29	-0.4
4,861,444	+		SO4662	0.29	+0.8
4,861,444	+		SO4662	0.29	-0.1
4,861,452	-		SO4662	0.31	-2.4
4,861,452	-		SO4662	0.31	-1.2
4,861,452	-		SO4662	0.31	-0.4
4,861,452	-		SO4662	0.31	-0.7
4,861,452	-		SO4662	0.31	-2.1
4,861,452	-		SO4662	0.31	+1.6
4,861,461	+		SO4662	0.32	-1.7
4,861,461	+		SO4662	0.32	-0.7
4,861,469	-		SO4662	0.34	+0.9
4,861,469	-		SO4662	0.34	-1.9
4,861,490	+		SO4662	0.37	+0.1
4,861,493	-		SO4662	0.38	+1.0
4,861,514	-		SO4662	0.41	+0.9
4,861,530	+		SO4662	0.44	+0.7
4,861,536	-		SO4662	0.45	-0.9
4,861,539	+		SO4662	0.46	+0.0
4,861,587	-		SO4662	0.54	+1.5
4,861,601	+		SO4662	0.57	+0.6
4,861,601	+		SO4662	0.57	+0.3
4,861,609	-		SO4662	0.58	-0.5
4,861,609	-		SO4662	0.58	-0.1
4,861,618	+		SO4662	0.60	+0.1
4,861,628	+		SO4662	0.62	+0.3
4,861,635	+		SO4662	0.63	+0.2
4,861,728	+		SO4662	0.79	-2.0
4,861,739	+		SO4662	0.81	+0.8
4,861,797	+				-1.1
4,861,814	-				-0.1
4,861,814	-				-2.1
4,861,853	+				-1.3
4,861,898	-				-1.2
4,861,919	+				+1.1
4,861,927	-				-2.6
4,861,945	+				-1.2
4,861,959	+				-2.1
4,861,959	+				+0.3
4,861,959	+				-0.6
4,861,959	+				-2.7
4,861,959	+				+0.7
4,861,959	+				-0.4
4,861,959	+				-0.6
4,861,959	+				+1.1
4,861,959	+				+0.5
4,861,959	+				+1.8
4,861,959	+				+0.4
4,861,965	+				+1.2
4,861,967	-				-2.7
4,861,967	-				+1.3
4,861,967	-				-0.6
4,861,967	-				+0.4
4,861,967	-				-0.6
4,861,967	-				+0.3
4,861,967	-				+0.9
4,861,967	-				-0.9
4,861,967	-				+0.7
4,861,967	-				-0.8
4,862,057	-				-1.4
4,862,077	+				-0.8
4,862,085	-		SO4663	0.17	-0.8
4,862,088	-		SO4663	0.19	-1.4
4,862,149	-		SO4663	0.76	-0.9
4,862,158	+		SO4663	0.84	+0.4
4,862,168	+				+0.8
4,862,168	+				+2.0
4,862,168	+				-2.9
4,862,168	+				+1.7
4,862,168	+				-0.4
4,862,168	+				+1.1
4,862,176	-				-1.3
4,862,202	+				-0.6
4,862,225	-				+1.2
4,862,248	-				-1.1
4,862,301	+				+0.0
4,862,309	-				-1.4
4,862,309	-				-3.2
4,862,359	+				-1.0
4,862,366	+				+0.7
4,862,371	+				-0.8
4,862,411	+				-1.2
4,862,418	+				-0.5
4,862,426	-				+0.1
4,862,488	+				-1.6
4,862,488	+				+1.4
4,862,488	+				-0.9
4,862,488	+				-0.8
4,862,496	-				+1.3
4,862,506	+				-2.6
4,862,529	+				-1.1
4,862,537	-				-0.3
4,862,599	+				-1.1
4,862,607	+				-1.6
4,862,607	+				-0.4
4,862,642	-		SO4665	0.18	+1.3
4,862,688	+		SO4665	0.41	-0.6
4,862,688	+		SO4665	0.41	-3.1
4,862,694	-		SO4665	0.44	-0.9
4,862,843	+				-1.8
4,862,843	+				-0.2
4,862,879	+				+0.5
4,862,887	-				-0.6
4,862,914	-				-0.3
4,862,942	+				+0.5
4,862,942	-				+1.8
4,862,949	+				-0.6
4,862,956	-				-0.3
4,862,957	-				+1.2
4,862,957	-				+1.2
4,862,957	-				-1.1
4,863,034	+				-0.5
4,863,092	-				-0.1
4,863,122	+				-0.1