Strain Fitness in Shewanella oneidensis MR-1 around SO4558

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,754,770	+		SO4557	0.72	-3.1
4,754,770	+		SO4557	0.72	-1.0
4,754,820	+		SO4557	0.74	-1.6
4,754,821	+		SO4557	0.75	+0.0
4,754,898	+		SO4557	0.79	-0.5
4,754,898	+		SO4557	0.79	-0.3
4,754,898	+		SO4557	0.79	-0.3
4,754,906	-		SO4557	0.79	-0.8
4,754,906	-		SO4557	0.79	-1.2
4,754,906	-		SO4557	0.79	-0.6
4,754,932	-		SO4557	0.80	+1.6
4,754,977	-		SO4557	0.83	-0.3
4,755,048	+		SO4557	0.87	+0.4
4,755,079	-		SO4557	0.88	-1.1
4,755,142	-				+0.3
4,755,176	-				+1.6
4,755,184	-				+0.1
4,755,311	+				-0.3
4,755,319	-				-0.8
4,755,319	-				-0.4
4,755,319	-				-0.8
4,755,329	-				+1.3
4,755,635	+				-1.6
4,755,643	-				-0.7
4,755,692	+				-0.1
4,755,693	+				-0.5
4,755,694	+				-0.0
4,755,708	+				+1.7
4,755,708	+				+0.0
4,755,708	+				-0.9
4,755,716	-				-1.5
4,755,716	-				-1.9
4,755,716	-				-0.6
4,755,829	-		SO4558	0.25	-0.5
4,755,836	+		SO4558	0.27	-0.1
4,755,883	+		SO4558	0.40	-2.3
4,755,893	+		SO4558	0.43	-0.7
4,755,947	-		SO4558	0.58	+0.6
4,756,053	-		SO4558	0.89	-0.2
4,756,064	+				-0.7
4,756,064	+				-1.1
4,756,064	+				-2.5
4,756,072	-				+0.8
4,756,095	+				+0.4
4,756,159	+				-3.3
4,756,159	+				+1.2
4,756,232	+				+1.3
4,756,275	+		SO4559	0.12	+0.5
4,756,293	-		SO4559	0.14	-1.2
4,756,323	-		SO4559	0.16	-0.1
4,756,355	+		SO4559	0.18	+0.3
4,756,370	+		SO4559	0.19	+1.6
4,756,445	-		SO4559	0.24	+0.3
4,756,445	-		SO4559	0.24	-2.1
4,756,455	-		SO4559	0.25	+0.5
4,756,455	-		SO4559	0.25	+1.6
4,756,637	-		SO4559	0.37	-0.0
4,756,637	-		SO4559	0.37	+1.4
4,756,704	-		SO4559	0.42	-0.9
4,756,721	+		SO4559	0.43	-1.7
4,756,765	-		SO4559	0.46	+0.3
4,756,804	-		SO4559	0.49	+2.3
4,756,811	+		SO4559	0.49	-1.0
4,756,811	+		SO4559	0.49	-1.9
4,756,865	-		SO4559	0.53	-1.2
4,756,871	-		SO4559	0.53	-1.5
4,756,911	+		SO4559	0.56	+0.5
4,756,911	+		SO4559	0.56	-1.7
4,756,973	+		SO4559	0.60	+1.4
4,757,051	-		SO4559	0.66	+2.0