Strain Fitness in Shewanella oneidensis MR-1 around SO4452

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,639,186	+	moaE	SO4449	0.82	-2.6
4,639,335	+	moaD	SO4450	0.26	-3.3
4,639,335	+	moaD	SO4450	0.26	+0.5
4,639,375	+	moaD	SO4450	0.42	+0.0
4,639,383	-	moaD	SO4450	0.45	+0.8
4,639,383	-	moaD	SO4450	0.45	-1.7
4,639,383	-	moaD	SO4450	0.45	-0.8
4,639,455	+	moaD	SO4450	0.73	-1.5
4,639,455	+	moaD	SO4450	0.73	+0.2
4,639,455	+	moaD	SO4450	0.73	-1.3
4,639,455	+	moaD	SO4450	0.73	+1.8
4,639,463	-	moaD	SO4450	0.77	-0.9
4,639,473	-	moaD	SO4450	0.81	-1.5
4,639,473	-	moaD	SO4450	0.81	-1.7
4,639,548	+				-0.3
4,639,548	+				-0.2
4,639,548	+				-2.5
4,639,548	+				+0.4
4,639,548	+				-2.0
4,639,548	+				-2.8
4,639,556	-				-0.1
4,639,556	-				-0.5
4,639,596	-	moaC	SO4451	0.11	-1.7
4,639,623	+	moaC	SO4451	0.17	-1.2
4,639,623	+	moaC	SO4451	0.17	-0.4
4,639,631	-	moaC	SO4451	0.19	-1.4
4,639,631	-	moaC	SO4451	0.19	-1.8
4,639,631	-	moaC	SO4451	0.19	-1.7
4,639,714	+	moaC	SO4451	0.36	-0.7
4,639,714	+	moaC	SO4451	0.36	-1.4
4,639,714	+	moaC	SO4451	0.36	+0.2
4,639,714	+	moaC	SO4451	0.36	-0.7
4,639,722	-	moaC	SO4451	0.38	-1.6
4,639,722	-	moaC	SO4451	0.38	-2.4
4,639,722	-	moaC	SO4451	0.38	-0.6
4,639,856	+	moaC	SO4451	0.66	-1.2
4,639,871	-	moaC	SO4451	0.69	-0.6
4,639,871	-	moaC	SO4451	0.69	-1.1
4,639,881	+	moaC	SO4451	0.71	-1.2
4,639,986	-				-1.0
4,640,011	-				-0.4
4,640,030	+				+0.1
4,640,038	-				-0.9
4,640,038	-				+0.3
4,640,056	-				+0.8
4,640,176	+				-1.3
4,640,260	-	moaA	SO4452	0.13	-0.4
4,640,277	+	moaA	SO4452	0.15	-1.2
4,640,417	-	moaA	SO4452	0.29	+0.4
4,640,431	+	moaA	SO4452	0.30	+0.7
4,640,443	+	moaA	SO4452	0.31	-0.8
4,640,443	+	moaA	SO4452	0.31	-0.3
4,640,451	-	moaA	SO4452	0.32	-1.3
4,640,451	-	moaA	SO4452	0.32	-2.2
4,640,451	-	moaA	SO4452	0.32	-0.3
4,640,468	+	moaA	SO4452	0.34	+0.2
4,640,476	-	moaA	SO4452	0.35	-0.6
4,640,480	+	moaA	SO4452	0.35	-0.6
4,640,488	-	moaA	SO4452	0.36	+0.8
4,640,488	-	moaA	SO4452	0.36	+0.9
4,640,577	+	moaA	SO4452	0.45	+2.0
4,640,614	+	moaA	SO4452	0.49	+0.9
4,640,639	-	moaA	SO4452	0.51	-0.2
4,640,678	-	moaA	SO4452	0.55	-1.7
4,640,747	-	moaA	SO4452	0.62	-1.8
4,640,747	-	moaA	SO4452	0.62	-0.5
4,640,760	+	moaA	SO4452	0.64	-0.8
4,640,778	-	moaA	SO4452	0.66	+1.5
4,640,778	-	moaA	SO4452	0.66	+1.0
4,640,783	-	moaA	SO4452	0.66	-1.1
4,640,811	+	moaA	SO4452	0.69	-1.5
4,641,155	-				+0.7
4,641,159	+				-0.1
4,641,189	-				-1.5
4,641,216	+				-1.5
4,641,216	+				+0.2
4,641,252	+				-2.7
4,641,268	+				+0.1
4,641,294	+				-0.8
4,641,300	-				+0.7
4,641,302	-				-1.5
4,641,371	+				-0.9
4,641,371	+				-0.0
4,641,376	+				-0.2
4,641,433	+				-1.7
4,641,435	+				-1.9
4,641,435	+				-0.2
4,641,477	-				+0.8
4,641,709	+		SO4453	0.14	-0.7
4,641,755	-		SO4453	0.16	-3.1
4,641,840	+		SO4453	0.22	-2.1
4,641,851	+				-0.3
4,641,874	-		SO4453	0.24	-1.1
4,641,918	-		SO4453	0.26	-3.2