Strain Fitness in Shewanella oneidensis MR-1 around SO4430

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,620,046	+		SO4429	0.34	-0.0
4,620,069	+		SO4429	0.39	+0.4
4,620,070	-		SO4429	0.39	+1.2
4,620,070	-		SO4429	0.39	-1.6
4,620,097	-		SO4429	0.44	-0.8
4,620,101	+		SO4429	0.45	+0.2
4,620,109	-		SO4429	0.47	-0.7
4,620,190	-		SO4429	0.62	+0.1
4,620,276	+		SO4429	0.79	+0.1
4,620,323	-		SO4429	0.88	-1.5
4,620,336	-				-1.1
4,620,383	-				-0.2
4,620,420	-				-1.6
4,620,437	-				+0.0
4,620,454	+				-0.8
4,620,481	-				+1.2
4,620,509	-				-1.9
4,620,510	-				-0.1
4,620,522	+				+1.2
4,620,541	-				+0.3
4,620,574	+				-2.2
4,620,574	+				+0.7
4,620,574	+				-0.2
4,620,574	+				-0.9
4,620,582	-				-1.4
4,620,582	-				+0.2
4,620,632	+				-1.8
4,620,673	+				-1.7
4,620,834	-				+0.2
4,620,907	-		SO4430	0.16	+0.2
4,620,929	-		SO4430	0.30	+0.1
4,620,936	-		SO4430	0.34	+0.6
4,620,936	-		SO4430	0.34	+0.2
4,620,943	+		SO4430	0.38	+2.2
4,620,951	-		SO4430	0.43	+1.7
4,621,015	+		SO4430	0.82	+1.7
4,621,093	-				-1.6
4,621,111	+		SO4431	0.13	+0.2
4,621,111	+		SO4431	0.13	+0.3
4,621,111	+		SO4431	0.13	+0.4
4,621,111	+		SO4431	0.13	+0.5
4,621,111	+		SO4431	0.13	-0.2
4,621,119	-		SO4431	0.17	-0.6
4,621,119	-		SO4431	0.17	+0.8
4,621,130	-		SO4431	0.22	-0.3
4,621,130	-		SO4431	0.22	+0.2
4,621,170	-		SO4431	0.40	-0.5
4,621,172	+		SO4431	0.41	-2.3
4,621,182	+		SO4431	0.46	+0.1
4,621,190	-		SO4431	0.50	+0.9
4,621,190	-		SO4431	0.50	-1.4