Strain Fitness in Shewanella oneidensis MR-1 around SO4379

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,573,651	+		SO4378	0.30	+0.7
4,573,704	+		SO4378	0.34	-0.1
4,573,704	+		SO4378	0.34	-0.2
4,573,706	+		SO4378	0.34	-1.9
4,573,712	-		SO4378	0.35	-2.2
4,573,714	-		SO4378	0.35	+0.8
4,573,795	+		SO4378	0.41	+1.0
4,573,843	+		SO4378	0.45	+2.3
4,573,851	-		SO4378	0.45	+1.0
4,573,852	-		SO4378	0.45	-0.1
4,573,865	+		SO4378	0.46	+0.7
4,573,874	-		SO4378	0.47	-0.9
4,573,916	+		SO4378	0.50	-0.9
4,573,938	-		SO4378	0.52	-0.9
4,574,060	+		SO4378	0.61	+1.6
4,574,079	-		SO4378	0.63	+2.1
4,574,105	-		SO4378	0.65	+0.4
4,574,110	+		SO4378	0.65	+0.7
4,574,262	+		SO4378	0.77	-0.5
4,574,280	+		SO4378	0.78	-0.3
4,574,285	+		SO4378	0.78	+1.2
4,574,297	+		SO4378	0.79	+0.6
4,574,298	-		SO4378	0.79	-1.2
4,574,319	+		SO4378	0.81	+1.3
4,574,354	-		SO4378	0.84	-1.9
4,574,354	-		SO4378	0.84	-1.4
4,574,570	-				-1.3
4,574,625	+				-0.1
4,574,666	-		SO4379	0.12	-0.8
4,574,812	-		SO4379	0.32	-2.3
4,574,879	-		SO4379	0.41	-1.1
4,574,883	+		SO4379	0.41	-0.1
4,574,883	+		SO4379	0.41	-1.2
4,574,891	-		SO4379	0.42	-0.1
4,574,891	-		SO4379	0.42	-1.4
4,574,904	+		SO4379	0.44	-0.0
4,574,904	+		SO4379	0.44	+0.0
4,574,904	+		SO4379	0.44	-1.0
4,574,904	+		SO4379	0.44	-0.3
4,574,904	+		SO4379	0.44	-2.4
4,574,904	+		SO4379	0.44	+0.3
4,574,912	-		SO4379	0.45	-1.3
4,574,912	-		SO4379	0.45	-0.2
4,574,953	+		SO4379	0.50	-0.5
4,574,961	-		SO4379	0.52	-1.1
4,574,966	+		SO4379	0.52	+0.6
4,575,020	+		SO4379	0.59	+0.1
4,575,046	+		SO4379	0.63	-0.4
4,575,123	-		SO4379	0.73	-1.8
4,575,143	-		SO4379	0.76	-1.2
4,575,143	-		SO4379	0.76	+0.5
4,575,196	-		SO4379	0.83	+0.9
4,575,326	+				+0.3
4,575,432	+				+0.4
4,575,440	-				-2.3
4,575,446	+				+1.3
4,575,454	-				-0.4
4,575,496	+				-0.1
4,575,496	+				-2.3
4,575,496	+				+0.9
4,575,504	-				-2.3
4,575,504	-				+0.2
4,575,504	-				+0.4
4,575,659	-		SO4380	0.19	-0.9
4,575,680	+		SO4380	0.21	+0.0
4,575,680	+		SO4380	0.21	-0.0
4,575,727	+		SO4380	0.24	-1.5
4,575,829	+		SO4380	0.33	-0.2
4,575,922	-		SO4380	0.40	+0.4
4,575,941	-		SO4380	0.42	-0.6
4,575,950	+		SO4380	0.43	-1.4
4,575,958	-		SO4380	0.43	-0.9
4,575,958	-		SO4380	0.43	-1.7
4,576,119	-		SO4380	0.57	-0.8
4,576,119	-		SO4380	0.57	+0.4
4,576,189	+		SO4380	0.62	-0.4
4,576,191	+		SO4380	0.62	+2.3
4,576,191	+		SO4380	0.62	-0.3
4,576,191	+		SO4380	0.62	-0.8
4,576,236	+		SO4380	0.66	+0.1