Strain Fitness in Shewanella oneidensis MR-1 around SO4260

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,436,477	+				+1.3
4,436,504	-				-0.4
4,436,540	-		SO4260	0.12	-1.1
4,436,619	+		SO4260	0.23	-0.5
4,436,619	+		SO4260	0.23	-0.0
4,436,658	+		SO4260	0.28	+1.1
4,436,663	-		SO4260	0.29	+1.0
4,436,668	+		SO4260	0.30	+1.7
4,436,721	+		SO4260	0.37	+0.5
4,436,729	-		SO4260	0.38	+1.5
4,436,731	+		SO4260	0.38	-0.5
4,436,754	+		SO4260	0.42	-1.7
4,436,795	+		SO4260	0.47	+0.4
4,436,852	+		SO4260	0.55	+0.3
4,436,914	+		SO4260	0.64	-1.3
4,436,915	+		SO4260	0.64	+0.0
4,436,923	-		SO4260	0.65	-0.4
4,436,943	+		SO4260	0.68	+0.6
4,437,008	+		SO4260	0.77	+0.4
4,437,008	+		SO4260	0.77	+0.4
4,437,016	-		SO4260	0.78	-0.6
4,437,027	-		SO4260	0.79	-1.1
4,437,059	+		SO4260	0.84	-0.8
4,437,087	-		SO4260	0.88	+0.1
4,437,143	+				+1.1
4,437,151	-				-1.1
4,437,151	-				-0.5
4,437,160	+				-0.7
4,437,252	+				+1.9
4,437,260	-				+0.5
4,437,260	-				+0.2
4,437,410	+				+0.1
4,437,410	+				+1.9
4,437,426	-				+1.7
4,437,430	+				+0.4
4,437,444	+				+0.7
4,437,499	+		SO4261	0.17	+0.9
4,437,502	+		SO4261	0.18	+0.6
4,437,502	+		SO4261	0.18	-0.1
4,437,507	-		SO4261	0.19	+2.7
4,437,510	-		SO4261	0.19	-0.4
4,437,510	-		SO4261	0.19	+0.3
4,437,510	-		SO4261	0.19	-1.2
4,437,540	-		SO4261	0.24	-1.7
4,437,544	+		SO4261	0.24	+1.2
4,437,564	-		SO4261	0.27	+0.5
4,437,633	+		SO4261	0.38	-0.7
4,437,633	-		SO4261	0.38	-1.2
4,437,665	+		SO4261	0.43	-0.8
4,437,678	+		SO4261	0.45	-0.1
4,437,686	-		SO4261	0.46	-0.1
4,437,686	-		SO4261	0.46	-1.6
4,437,690	+		SO4261	0.47	+0.3
4,437,697	+		SO4261	0.48	+1.1
4,437,714	+		SO4261	0.50	-0.4
4,437,736	+		SO4261	0.54	-0.4
4,437,759	+		SO4261	0.57	+0.0
4,437,759	+		SO4261	0.57	-1.9
4,437,767	-		SO4261	0.59	-0.7
4,437,849	-		SO4261	0.71	+3.3
4,437,849	-		SO4261	0.71	-1.6
4,437,853	+		SO4261	0.72	-0.7
4,437,861	-		SO4261	0.73	-1.7
4,437,885	+		SO4261	0.77	-0.1
4,437,917	-		SO4261	0.82	+1.5
4,437,930	-		SO4261	0.84	+0.3
4,438,011	-				-1.0
4,438,049	+				+0.4
4,438,089	-				+1.4
4,438,089	-				-1.6
4,438,091	+				-0.6
4,438,110	+				-1.4
4,438,110	+				-0.1
4,438,110	+				+2.0