Strain Fitness in Shewanella oneidensis MR-1 around SO4255

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,430,658	+				+0.0
4,430,658	+				-1.2
4,430,658	+				-2.8
4,430,658	+				+0.8
4,430,659	+				-1.8
4,430,659	+				-2.9
4,430,659	+				-0.7
4,430,659	+				-0.9
4,430,659	+				+0.7
4,430,729	+				-1.3
4,430,729	+				+0.2
4,430,729	+				+0.5
4,431,425	-				-2.7
4,431,430	-				-2.4
4,431,527	-				-3.9
4,431,684	+	pyrE	SO4255	0.26	-2.3
4,431,807	-	pyrE	SO4255	0.45	-2.5
4,431,818	-	pyrE	SO4255	0.47	+0.3
4,431,827	+	pyrE	SO4255	0.48	-0.5
4,431,827	+	pyrE	SO4255	0.48	-3.0
4,431,835	-	pyrE	SO4255	0.49	-2.3
4,431,835	-	pyrE	SO4255	0.49	-2.6
4,431,869	+	pyrE	SO4255	0.54	-2.2
4,431,911	+	pyrE	SO4255	0.61	-1.8
4,431,936	+	pyrE	SO4255	0.65	-1.9
4,431,951	-	pyrE	SO4255	0.67	-2.1
4,432,039	+	pyrE	SO4255	0.81	-0.5
4,432,039	+	pyrE	SO4255	0.81	-3.1
4,432,039	+	pyrE	SO4255	0.81	-0.3
4,432,039	+				+1.3
4,432,047	-	pyrE	SO4255	0.82	-2.5
4,432,069	+	pyrE	SO4255	0.85	-2.6
4,432,179	-				+0.3
4,432,250	+				-1.5
4,432,250	+				-0.1
4,432,258	-				+0.6
4,432,258	-				-0.7
4,432,330	+				-0.1
4,432,503	+	rph	SO4256	0.23	-0.5
4,432,519	-	rph	SO4256	0.25	-1.6
4,432,553	-	rph	SO4256	0.30	-3.3
4,432,645	-	rph	SO4256	0.43	+0.3
4,432,661	+	rph	SO4256	0.45	-2.4
4,432,835	+	rph	SO4256	0.70	+0.2
4,432,836	-	rph	SO4256	0.70	-2.5
4,432,843	-	rph	SO4256	0.71	+4.6
4,432,843	-	rph	SO4256	0.71	-2.8
4,432,843	-	rph	SO4256	0.71	-2.5
4,432,843	-	rph	SO4256	0.71	-2.3
4,432,843	-	rph	SO4256	0.71	-1.1
4,432,886	+	rph	SO4256	0.77	-1.3
4,432,939	+	rph	SO4256	0.84	-0.7
4,432,974	-	rph	SO4256	0.89	-0.7
4,432,974	-	rph	SO4256	0.89	-0.6
4,432,982	-				+0.7
4,433,031	+				-0.5
4,433,067	-				-2.1
4,433,133	-				+1.0